RNA id: TCONS_00067407


Basic Information

Item Value
RNA id TCONS_00067407
length 4638
RNA type mRNA
GC content 0.48
exon number 17
gene id XLOC_034620
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 18474563 ~ 18547420 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCTGACCCTTAGCAGCACAGCAAGATGATCTTCCCTGGATAGAATTTTATCTGAACGAAACTACTATACAAGTAGAAAATTCTACTATTACCAGGATCAGAGTGAGAGTTGTCAAGCAACCTGACTCAACAATGAGGCTTTTGGACCGTCCCATCAGCCCGGCGGTCCGCAGGGTGGAAATGGAGCGTGGCAGAGCTGGCTATGGATTCACCATTGCCGGTCAAGCACCATGTGTTCTCAGAGGAATAATAAAAGGGAGTCCGGCGCACAGTGTAGGACTACTACCTGGGGATCGTGTCTTGCGTGTAAATGACACAGATGTGTCTGAAGCATCACATGATGTTGTGGTGAAGTTGATCGGTACTTCATCAAAGTCACTGTGTTTGCTGGTCACATCAGGTGATCGACCACCCATGGCCTGCTGCTCCAGTGACGAGGAACTGGGTTGTCAGAATAAGAGTAAACGTCCGTGGCTCAATCCTGGAATAAAGGACCCTTTCCCAGGTAAACTTGATGGCAGGGATTTGAAGGAACCAATTCTTCAGTCGGTTGGAAGTTTTGATACCGTCTTTGAGATCTCAGATCAGGGCACCATGACCCCACATCAGGAGAAGCAGAAAAAACAAAGACCTTTGTCTGAACCAGATGTGTCTTACTGGTTGCAGCAGCAGCAGAGATCCAAAGGGAATGTCGATATTCTTTCACAGGATGAAACATCTCGAGTAGTGAGTGAGGATTCTGTGTTTTCAGACCTTCAGAGTCAGAATGACCTTGCATCTGACTCCAGCATCCTGAACGTTGCAATGATTGTCGGATACATTAATTCCATGGAACTGGAGCTAGTAATGTCACAAACTGAGGAGGATGCATTGCAGGTCATCCGGCAATGCATTAGTAAGATTGGTATTGAGCAGAAGACTCATTCGCTGGTCTTAATGAAGGTTAAATGCAACTGTGTTCAACTTTGCGATGACCGAGATGTTGTTCTTGCATCTTACCCAGCAGAAAACCTGGCTCTTTGCGTAATTTGCACAGAAGACAGCAGGTTCTTTGGCCTTGTCTCGATTGATTCAACCAAAAATATAGACACCGGGAGGCAGACAAGTACCTTGAAGACattatgtcatgtttttttcataGACCCAGAGCTTTATGAACACAAGGAGCACCAAAGCATCATCGGACACTTTGGGATTCCCTGCACCCCAGATCCAGACACTCAAAGCTGTTTGGAGTTTCCTCAAACCCCCCACTCCATTTCACACTTCATATCCGTCCTCTATGCAGACATGGGAGATTACATTGAAAAACTAAGACTTAAACTTGACAGTGAGAATCCTGACGAAGGATCCCAAAATGCACGGAACAGCGGCAGTGGCAGCGGCAGTGATAGCGGGATTGGAAATGCTTCACCAGAGGAAAGAGACAGTCTCATTGGTCAGTGGAGCTTCACATCTCCAAACATTTGCAATCCACCACCACCATATTATTCCCAGCACAGGAATAGTACATTCCTCAAACCAGAGTGCAGATGCCTTCTTTCTGAGCCACTAACAGGATCCGCTCAACCTGCGACTCCATCAGGTGTCCCAGCCGGGGCGGACGGTTCAGCGTTTACTCCTGTTCCTCTCAGTAAGCAATCTAACTTGCCTCCAAAACAAAGAGCCGGTCAACGAAGACCTTCCATTGGCTTAAAGGCTCGCTGGCAGAAATCTCGCCCCAACAGCATTGAGTGCTTAGTGGAAGGGGACAACGATGATCCCAAAAGTAAATGCAGTACCCTTCCACCTGCAATGGAGCAAATCCCTACTCTGAGATACAAACCTTTAGAACATACTCAGAGAATAAACTTCACCCCGCAGCTTGAGCTGACATCCAGGTTCTTCAGCAGTGCAGCTAAGCAGAAGGATGGAGAAAACAAGGGATCTTTATTTTGGGCTCTCACAAGGGGACGCTCTTCTGTTCGAAGACCGTCAGGTCCCGCTAAACGACTCAGTCTGGCTCATTCACTTAATGATCTTGAGtcGGCTGCATCAGATGGAGAGCGCAGTGGTGGTGGTGTCCAGCGTCACGACTGCAGCAGCGTGAGCAGTTTGGACAGTAACGGTAGTCTGCCCAGCGTCACCAACCACTGTCGTTTCACAGAGCGCCGCGTTGCATTATGGGCAGTCAGCTTCGAGCGATTGCTTCAGGATCCTGTGGGTGTCCGCTATTTTTCTGAGTTTCTAAAGAAGGAGTTTAGCGAGGAAAACATCTTATTCTGGCAGGCCTGTGAATGCTTCAGCCAAGTTCCAGAACATGACAAAAAGCAGCTGTCCCAGAAGGCCAAAGAGATCTACAACCGTTTCCTCTCAAGTAAAGCCACAATGCCAGTGAACATCGACAGTCAAGCTCAACTTGCGGACGATGTCCTGACAGCTCCACAGCCTAACATGTTCAAACAGCCACAGCTACAGATCTTCAACCTGATGAAGATGGACAGTTATGCGCGCTTCTTGAAGTCCACTCTCTATCAGGAGTGTATGCTGGCAGAGGTGGAGGGTCGACCTCTGCCTGACCCCTGTCCCATCCCGTGCAGCCCTGCCCCATCCAAACACAGCTTCACCTCTGACCGCTCCACATTCTCCACTCCTAAAAAGGAAAACAGGAAGCCCAAAACAGGCAGGTCAAGCGATGATCTCAGAGAGAAACACTCTGATAAGAAAAACGGCTTCTTTTCCTGGTACAGATATCCAAGTATTGGGAAAGGACAAAAGAAAAGAGAGGCCCCAGATTTACCCTACCACTGTAATGGGCGGAGAGAGTCTCAAGGTTCTCTGTCTTCTGGAGCGAGTCAAGAGCTCAACACTTCCTGTTCAGGAGGAAAGAATGAGCAGTGTGAGCTAAGAGGTTCGAGTTGTGCTTTGGATAAGGAGCGAGAGCGCTGCAGCAGGACATGTACAGTAACACTGCCCGACGGCTCCAGCTGCTCTATTCCTCTCCGACAGGGAGCCTCCATCAGACAAGTGCTGCTAGAGCTCTGCCAAAAACAACACATCAACCTGGCTGCTGTCGACCTCTTTCTCACCGGTGGAGAGAAGCCTTTGGTCTTGGATCAAGATAGTATTACTCTCAGCTCCAGGGAACTTCGTCTTGAGAAGCGCACTTTGTTCAGATTGGACCTGGTACCCATTAACAGATCGGTTGGGTTGAAAGCGAAGCCCACAAAACCTGTGACTGAGGTTCTACGGCCTGTGGTTGCCAAGTATGGACTCCAGCTTGGCGATTTGGTGGCCAGAATAAGTGGCGAGACAGAGGTACTCGATCTTGGAGTGCCCATATCAAACCTTGATGGCCTGCGAGTTGTCTTGGAGAGGGCAGATCCAGCCAAagAAAAGTCTAAAACACTCAACTCCAAAACACCAGCTGCCAAGAAAGGGTTTCCAAGAGAGAGAGACGATAACTCGACAGTGAAACCATTGAAAGCAGATGTTGAAGACAAGCATCCCCGCACAGCTGCGTCTGAGAGGAAGAAAGGCAAAAAGAATCATATAGATGAAACTGAAGAGTTTTTCGAGTTGTTGAGTCGTGCTCAGAGCAGTCGTGTTGACGACCAGAGAGGCCTGCTGAGAAAAGAAGATCTTGTCCTTCCCGACTTCCTTCGAGTAAACCCTGATCCCAAACCTCAATCTCCTCCGTCCTGTTCAACCCCGACCTCTCATAAACCCGGCCACACCACTACCACCTCCACAAACCCCCATCCCCCTAAACCCAGCCCCTGTAACGGACACCAAGCCTCAGCCCCGTTCAGCGCGCCACTCTCCCCCATCCTGCGTTCTGCTGGTGCCCgcgagcaggaggaggaggaaggcCTAGGAGATTTGACTCTGGTGGCGGAGGGTGACATCAGCAGCCCAAACTCCACCCTGCTCCCGCCTCCACCGCCCGTATCACCACCGCCTTATGATGGTAGTCTAGCAGAGGCCAACTTTACTCCTCCACCGGCTGTTCACGGCACAGGTACAGAAGAAGAAAACACGAGCACTTCAGCAGTAAACAGCTCAACAGCACAGCCGGACTTGCGTGTGCGGGACAAGGGTGTCACTCTGGAGGACAGTTTTGAAGGATACGCAGCTGAACTTCGCCAGTGCCAGAACAAAATGAGAAACGGCGTTTATCCCTCCACAGAAGCCCCCCGTCCCCTCAGCGGTGTGCTGGAAGTCAACGAGAGCGACACTGTGCAATACAAAGCAACGTTTGTCTGAAAGAAGAAGAAGCTGCTTTCAAAAAGACTGATGATGACAGAGCCAAAATGTGTATGTGGAACAAATTGTGTATATTAATAACGGAAACCTGAGATCCAATATTTTGTACGTTTTGaacttttttgtatttaatgatGAAAACGAAAAGCTGTTCAGTGTTAGTTTTGGGGACTAACTGCTTATCGGAATATCAGTGCTGGCATGTAAAACGCAGATGTTTGTCTGTAGTTATAGTGGAAGTTAGTGCAACAGTTCATAGTTCACATTCATCCTATTGATTTTTTGCTTTTGCACTGTGATTTTTTTAACTATGTGCAAACATCTAATCTCTTGTTGAACAGACTCAGCTCTAAAAGCCACAAAATGAATTGTtcgttattaaaattttttttt

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0030695 GTPase regulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2614 Predicted to enable GTPase activator activity. Predicted to act upstream of or within signal transduction. Predicted to be located in cytoplasm and dendrite. Orthologous to human RGS12 (regulator of G protein signaling 12).

Ensembl:

ensembl_id ENSDART00000040534

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00067396 lncRNA downstream 661151 17810303 ~ 17813414 (-) False XLOC_034614
TCONS_00067389 lncRNA downstream 765935 17695226 ~ 17708630 (-) True XLOC_034612
TCONS_00068673 lncRNA downstream 898468 17575791 ~ 17576097 (-) True XLOC_034605
TCONS_00067366 lncRNA downstream 1094255 17358084 ~ 17380310 (-) True XLOC_034601
TCONS_00069169 lncRNA downstream 1218954 17251202 ~ 17255611 (-) False XLOC_034596
TCONS_00067415 lncRNA upstream 97499 18643014 ~ 18650779 (-) True XLOC_034624
TCONS_00067420 lncRNA upstream 162468 18707983 ~ 18712554 (-) False XLOC_034626
TCONS_00069170 lncRNA upstream 171245 18716760 ~ 18723012 (-) False XLOC_034627
TCONS_00069171 lncRNA upstream 217432 18762947 ~ 18773947 (-) True XLOC_034628
TCONS_00069172 lncRNA upstream 234861 18780376 ~ 18810848 (-) False XLOC_034629
TCONS_00067405 mRNA downstream 3602 18462242 ~ 18470963 (-) False XLOC_034619
TCONS_00067404 mRNA downstream 3602 18462242 ~ 18470963 (-) True XLOC_034619
TCONS_00067402 mRNA downstream 28814 18412621 ~ 18445751 (-) False XLOC_034618
TCONS_00067403 mRNA downstream 57824 18415071 ~ 18416741 (-) True XLOC_034618
TCONS_00067400 mRNA downstream 306072 18121722 ~ 18168493 (-) True XLOC_034616
TCONS_00067409 mRNA upstream 4154 18549669 ~ 18554603 (-) True XLOC_034621
TCONS_00067410 mRNA upstream 12424 18557939 ~ 18598661 (-) False XLOC_034622
TCONS_00067411 mRNA upstream 12749 18558264 ~ 18601206 (-) False XLOC_034622
TCONS_00067413 mRNA upstream 61283 18606798 ~ 18617187 (-) True XLOC_034623
TCONS_00067414 mRNA upstream 72467 18617982 ~ 18656069 (-) False XLOC_034624
TCONS_00067401 other downstream 226874 18247037 ~ 18247691 (-) True XLOC_034617
TCONS_00067399 other downstream 612025 17862425 ~ 17862540 (-) True XLOC_034615
TCONS_00067385 other downstream 828815 17641188 ~ 17645750 (-) True XLOC_034610
TCONS_00067372 other downstream 1058473 17415388 ~ 17416092 (-) False XLOC_034602
TCONS_00067360 other downstream 1210256 17261616 ~ 17264309 (-) True XLOC_034597
TCONS_00067412 other upstream 18249 18563764 ~ 18569333 (-) True XLOC_034622
TCONS_00067426 other upstream 281459 18826974 ~ 18827973 (-) True XLOC_034629
TCONS_00067455 other upstream 1410563 19956078 ~ 19956192 (-) True XLOC_034652
TCONS_00067492 other upstream 3277848 21823363 ~ 21823527 (-) True XLOC_034673
TCONS_00067493 other upstream 3285171 21830686 ~ 21830850 (-) True XLOC_034674

Expression Profile

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