XLOC_034724 (cmtr2)


Basic Information

Item Value
gene id XLOC_034724
gene name cmtr2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 24714840 ~ 24719655 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00067576
CTGAAGTCACTCCCCCTCGTCACGTCCGAGTCGCGCTTCATAGCAGCTGTGCACGTGACGAGGAAGCGAGAAACCGTTCTCAGatttttttttcaatgattgATGTCACCAAACTTGAGTTCAAAGGATGAACAGGGGCCGGGGAGTGAGGAAAAGAAATGCACCAGAAAAAGCAAGCATCCTCGAAACCTGTGATGAGGAGATTCGTGCAGAAGTTGCCCAGCTCTTCAACAAGGTCAGAAGTTATGTTCCACCTGAAGGGGAGAAATGGACGTTGCCTGACCCAAACGTGGTGCTCTGCGATCCTCACGTGAGTCACCCACGTTTGCAGGCTCTGAAACATTCTCTAAATGAAGTCAAGAATCAGCTCAGCGATAAAGATCTGTCAGTATGGCACCAGCACACTTGTTTCACCAACCGAGCAGGCACTGTTACCTCCCACCTTCGCTCTACGACCAATGCAGAGCTCTGCACTCAGGCTTGGGCCAAGTTCTATGAGATCTTAGGCACTTTTCAACTTCTGCCTGACAGCGCATTGAAGACTGGTGAGTTGAACTCTATACACCTGTGCGAAGCTCCTGGTGCCTTCATATCAGCTCTGAATCACTTCCTCAAGACCAGCGGCCTGCACTGCGACTGGAACTGGATTGCCAACACTCTAAATCCATACTACGAAGCCAACGGACGTGGTTGCACTATTACCGATGACAGACTCATCGTACACACTCTGCCTTGGTGGTTCTTCGGATCCGACAACACAGGTGACATAATGCTTCAGAAGCATCTGCTGGAACTGCCGAGATTTGTGAGCAACATGCGCAGTGTTGATTTGGTTACAGCAGATGGAAGCTTTGACTGTCAGGGAGACCCAGGGGAGCAGGAAAGATTAGTTGCTCCGCTACAACATTGCGAAGCCATTTGTGCGCTGCTGCTGTTAGGAACTGGAGGCTCATTTGTCCTAAAGATGTTCACACTTTTCGAACACTCATCTGTCTGCCTGCTGTATCTCCTCGCCTGCTGCTTTCGCTCCGTGAACATCTTCAAGCCAGGCACCAGCAAGTCTGGAAACTCAGAATTGTATATAGTGTGCTTGGACTATCAGGCCAAAGAACAAATTCGGCCATTGCTCTCAAAGTTAATCCGTAATTATGGACCAGACTTGGCATCCACAGCGTCGCTCTTTCCCCGTCGCTGCATTCCAGACTCCTTTTTAAGTCAGCATGAAGAGATATGCACTTTTTTCCAAGCATTGCAAGTCAACACTATTCAGGAGAACCTCAGGCTTTTCGTATGCATGAGCACAGAGCAGCGCAGGCGATTGGAGCAGCTCAGGGAATACGCTGCAGAGTTTTATACTAAACGGTTCAGTGTTCAATACCTCCCTCGGAAAAGCTGGGTTTGTAGAGGCGGCGTGGTTAGATGGGTAAAAGTTTGTGAGCGGAAGCAAATGGGCTCTTTAAATCAGCGCAAGGAGATGGAGCTTCAGGGATGGAAGCAGCGTCTTGCCCAAGGAAATTATGGGCCGTTCATAGAGAAGCATCTTGTTGCAGCAGAAGGATGTGAGGTTGTACTCAATGGCCCATTGGACGAGTGCGATTTGGGAGCCTGGTTTGCCCTTGAGGGAGCTGCCCTACCGAAAGTCTGCAGTTCCACCTTCTGTGATCAAGAAATGCTAGACTTTCTGAATGAAGCTCTGGAAGGGAACCTGCGGGTCAAAACAGTGAACTGGTCCCTCAAAGCCTTGCCAACATGCAGCTCCTGCAGCTCTGACTCCCCTGTAAGCATCTTATCTGAGATATGCAGTCATCCGGATGTGACATCTTGTTTGGTGCTGGGTAGCCAGTCTTGGTGTGACGACAAACTAACAGGCGTTCGAATCCAGCCTGAGTTTTTGCAAGGACCCTCTTATTGTGGGGTGCAGAACGTCACAATGCATGATGGACAACCAGACTATCAACTCGAGCTTCTGAATGCTGTCCTGTTCGCTCTACAGAAGCAGGATCAGGGCTCAACCCTGGTGATTCCCTTAAGTTCTGCGTTGACACGCTTCACCTCTGGACTGGTTTTCACACTCCACCTGTGCTTCCGTTACATCACATTCCGATGCTTGTCTGGTTGGCCTCCCGCTGCTCTGGTTTGCATGGGTTTCTCTCCACCTTCAGCCTTACCCAGCCTtctggactttctccagaatgtAATGGAGAAGATGAAGAAAGTTAAACTGGGAAGGCAGGTTCTGCAGTTTGTGCCTTTAGAGGAACTTCTCAGAGGGGAATTACCTCACTTCTTGTCTTCCTTCAATACAGCTGTGATCCGCCAGCAGCTGCATATGCTAATACAGCTTGATCAGAGCACATAATGCTAGCCCAGCATGGCTTTATCCTCTGGAAGAACTTATCATTTCGAGTATATTCATCATAATCATGCCTCAGTTTGCTTAGATTGAAGACATAGCCTCGGTTGTGCTAGTGCCACGGTGGACATTTAGGTTGTATTGGAACACAGATTTCCCCCATTTTAGATATTTACACTGGGGAGGATCTCTTTCTTTAACTTTGAATGTGCTGCATATGACTGGGATTTTCTTtatagatatatttatgtaaGAGCATGTGCAGTTCAACATTTTTTattctaatatttatatttgttgccTAGGGCTTTTTTATACACTAAAGTTCTTGAGTTGACTCAAATTGTCTGTCCTGCCTGATTTATTAAAACCCTTTCTTTATGGGCA

Function

symbol description
cmtr2 Predicted to enable mRNA (nucleoside-2'-O-)-methyltransferase activity. Predicted to be involved in 7-methylguanosine mRNA capping; cap1 mRNA methylation; and cap2 mRNA methylation. Predicted to act upstream of or within mRNA processing and methylation. Predicted to be active in cytoplasm and nucleus. Orthologous to human CMTR2 (cap methyltransferase 2).

GO:

id name namespace
GO:0097309 cap1 mRNA methylation biological_process
GO:0097310 cap2 mRNA methylation biological_process
GO:0006370 7-methylguanosine mRNA capping biological_process
GO:0006397 mRNA processing biological_process
GO:0032259 methylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-040426-2775 Predicted to enable mRNA (nucleoside-2'-O-)-methyltransferase activity. Predicted to be involved in 7-methylguanosine mRNA capping; cap1 mRNA methylation; and cap2 mRNA methylation. Predicted to act upstream of or within mRNA processing and methylation. Predicted to be active in cytoplasm and nucleus. Orthologous to human CMTR2 (cap methyltransferase 2).

Ensembl:

ensembl_id ENSDARG00000036345

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00067576 True 2740 mRNA 0.48 2 24714840 24719655

Neighbor

gene id symbol gene type direction distance location
XLOC_034723 calb2b coding downstream 14855 24681278 ~ 24699985 (-)
XLOC_034722 rgp1 coding downstream 69300 24627076 ~ 24645540 (-)
XLOC_034721 pik3c3 coding downstream 93144 24593209 ~ 24621696 (-)
XLOC_034720 NA coding downstream 124975 24580967 ~ 24589865 (-)
XLOC_034719 faah2b coding downstream 193974 24508123 ~ 24520866 (-)
XLOC_034725 otub1b coding upstream 96154 24815809 ~ 24828887 (-)
XLOC_034726 fam113 coding upstream 110921 24830576 ~ 24838857 (-)
XLOC_034727 BX511061.1 coding upstream 121046 24840701 ~ 24853898 (-)
XLOC_034728 adad2 coding upstream 142816 24862471 ~ 24875421 (-)
XLOC_034729 rcor2 coding upstream 260178 24979833 ~ 24995640 (-)
XLOC_034707 CR388231.6 non-coding downstream 644944 24058768 ~ 24069896 (-)
XLOC_034702 NA non-coding downstream 765155 23946001 ~ 23949685 (-)
XLOC_034701 CR388231.5 non-coding downstream 808347 23902484 ~ 23906493 (-)
XLOC_034698 NA non-coding downstream 856513 23852487 ~ 23858327 (-)
XLOC_034734 CU464085.1 non-coding upstream 571378 25291033 ~ 25291152 (-)
XLOC_034735 CU929416.1 non-coding upstream 620101 25339756 ~ 25523467 (-)
XLOC_034737 CU467013.2 non-coding upstream 1043529 25763184 ~ 25763298 (-)
XLOC_034738 CU467013.1 non-coding upstream 1071574 25791229 ~ 25791355 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000026_01135025_01137262 CMTR2 coding CI01000026 null 1134653 ~ 1138260 (-)