XLOC_034723 (calb2b)


Basic Information

Item Value
gene id XLOC_034723
gene name calb2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 24681278 ~ 24699985 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00067575
ACTGCTGTTCTGTCGGGCTATTACCAGAGACCTTCCAGAGAGGAGTGCTTTAAAGACGGGACAtttctttctttgaggaacaaaATCACAGAAGGCTGAGGAAACACCATAGGTATGGCGAATAAAGCACCAGAGCCCATTTCTCTGCATTTGGCGGAACTCACTGCCTCTCAGTTTCTGGACATCTGGAATAAATTTGATGCTGACGGCAATGGCTGCATTGAAGGGAAGGAACTGGAAAATTTCATCCGTGAGCTGGAGATTGCACGGAAAACTGCGGATCCTTCAAATGCTTCATTTAAAGACAGGATGAAAGAGTTTATGCAGAAATTCGATGAGAACGGTGATGGGAAGATCGAGATGTCAGAGCTGGCCCAGATCCTGCCGACAGAGGAGAATTTTCTATTGTGCTTCAGACAGTTTGTGGGATCCAGTGCAGAGTTTATGACGGCATGGAGAAAATATGATACCGATCGCAGCGGATACATTGAATCCAATGAACTGAAGGGCTTCCTGTCAGATCTGCTGAAGAAAGCCAACAGACATTATGATGACAAGAAACTGAATGAGTATACGCAGACCATACTTAAAATGTTCGACCTGAATGGCGACGGGAAACTGGGACTGTCTGAGATGGCCAGACTGCTTCCTGTGGAAGAGAATTTTCTGCTCAAGTTTCAGAACTTCAAACTGTCTGCTGAAGAATTTGAAGCAATCTTCAACTATTACGACAAGGATGGCAATGGTTATATTGATGAACATGAACTGGATGCCCTGCTGAGAGACCTCTACCATAAACATAAAATGGCCGTTGACCCTCACAGCCTGTCCAGCTCAAAGAAGAGCATCATGGCGCTGTCTGATGGAGGAAAGCTGTTCCGCACAGAACTGGAGATTGTGCTATGCAAAGATCCATCAGTGTGAAGCTCTGAACTCTCACTCCtctgcctcctcctcctccatacCTTCACCCACCCCAATCTAGCCAAAGCAGGTGCATGTGGTGGCTCTGCTCCACCTCTATCCTGTCTGAGTTAGTCAGCGTCCACAACCTACCCTCTCTCCGTGGCATGCCTTTCCCAAAGATATGGATTCTCGATGTGTGCATCTCTCTTTTTATGTCAAAATGACATTGTGGTATTATAATGGCTATATGGTCTCTCTCTCCTGCTCGTATCAAATCTTTCattaagtttgttattttatgtacagCGTGCAGTCTCtgctctctctccttttctctctCCCATTCCTCCTTTTTTTGTTCCTAGCAAGACTGTAGACTGTTCTGATTTGCCAACACTGATAAAAGAATGACTCAAATAAAGATCAGAAAAGACA

Function

symbol description
calb2b Predicted to enable calcium ion binding activity. Predicted to be involved in regulation of long-term synaptic potentiation and regulation of presynaptic cytosolic calcium ion concentration. Predicted to be active in several cellular components, including cytosol; dendrite; and terminal bouton. Is expressed in several structures, including head; nervous system; neural rod; neural tube; and sensory epithelial cell. Orthologous to human CALB2 (calbindin 2).

GO:

id name namespace
GO:0051480 regulation of cytosolic calcium ion concentration biological_process
GO:1900271 regulation of long-term synaptic potentiation biological_process
GO:0099509 regulation of presynaptic cytosolic calcium ion concentration biological_process
GO:0043005 neuron projection cellular_component
GO:0030425 dendrite cellular_component
GO:0005829 cytosol cellular_component
GO:0045202 synapse cellular_component
GO:0005634 nucleus cellular_component
GO:0043195 terminal bouton cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1668 Predicted to enable calcium ion binding activity. Predicted to be involved in regulation of long-term synaptic potentiation and regulation of presynaptic cytosolic calcium ion concentration. Predicted to be active in several cellular components, including cytosol; dendrite; and terminal bouton. Is expressed in several structures, including head; nervous system; neural rod; neural tube; and sensory epithelial cell. Orthologous to human CALB2 (calbindin 2).

Ensembl:

ensembl_id ENSDARG00000036344

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00067575 True 1341 mRNA 0.45 11 24681278 24699985

Neighbor

gene id symbol gene type direction distance location
XLOC_034722 rgp1 coding downstream 35738 24627076 ~ 24645540 (-)
XLOC_034721 pik3c3 coding downstream 59582 24593209 ~ 24621696 (-)
XLOC_034720 NA coding downstream 91413 24580967 ~ 24589865 (-)
XLOC_034719 faah2b coding downstream 160412 24508123 ~ 24520866 (-)
XLOC_034718 C7H4orf48 coding downstream 189381 24485048 ~ 24491897 (-)
XLOC_034724 cmtr2 coding upstream 14855 24714840 ~ 24719655 (-)
XLOC_034725 otub1b coding upstream 115824 24815809 ~ 24828887 (-)
XLOC_034726 fam113 coding upstream 130591 24830576 ~ 24838857 (-)
XLOC_034727 BX511061.1 coding upstream 140716 24840701 ~ 24853898 (-)
XLOC_034728 adad2 coding upstream 162486 24862471 ~ 24875421 (-)
XLOC_034707 CR388231.6 non-coding downstream 611382 24058768 ~ 24069896 (-)
XLOC_034702 NA non-coding downstream 731593 23946001 ~ 23949685 (-)
XLOC_034701 CR388231.5 non-coding downstream 774785 23902484 ~ 23906493 (-)
XLOC_034698 NA non-coding downstream 822951 23852487 ~ 23858327 (-)
XLOC_034734 CU464085.1 non-coding upstream 591048 25291033 ~ 25291152 (-)
XLOC_034735 CU929416.1 non-coding upstream 639771 25339756 ~ 25523467 (-)
XLOC_034737 CU467013.2 non-coding upstream 1063199 25763184 ~ 25763298 (-)
XLOC_034738 CU467013.1 non-coding upstream 1091244 25791229 ~ 25791355 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000026_01112372_01124229 NA coding CI01000026 null 1111921 ~ 1124229 (-)