XLOC_034735 (CU929416.1)


Basic Information

Item Value
gene id XLOC_034735
gene name CU929416.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 25339756 ~ 25523467 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00067601
TTCTGCTGAGATTTGATGTAACACGAACTAGACAAACAATTGGAATCATATCACATCGTCAAAGTGTCGTGGCCCAATGTGCACTGTAGAAGAACCCTATCAGGCCTGTGACCCATTTTTGGGTCTTGACCCACCAGTTCGGAAGTACAGCTCTAAACGATCTTCTCCATTTGAGGGCTTCTCAGGCATCTGGTTCTCATGCAGaGTGAGTGGAGTGAAAAATGagaggaaagaaagagagaaatggaTTGTGACGGAGGTAGCGAGGGTAATAGGATTGAGCCTGGACTCTGCGGGGTTGAGCTGCCCTCCTAACCGGACTCACTTCCTCTTCTCTCCTCTTCCCCACTGCGAGGTCAACCAGTCGTCCATCAGATCGCTGGCTAATCCTTTCACAATGATTGAGTTGGACAAGTTTCTGAGACCAAAAGCGTAAAGAAGACGATGAATGAAAGAGAGATCACACCCAATAGATGAGGTCGATGGGAAGACTGAAGACGTTCTCCACAAACTCCTGGAAGGTGCTGAACAAACAGTGCATCTCTTCTTCTGGGATGCGGAAACCCAGGAGCACGCGTACTGCCATGTTGAATGATAGCCGCTGGGACTCGCGATACACATTGATGGGGTCAGGATTGGAGCTCCACACACGTAGGGTCTCCTGAATGACCTGCTGGATCTTGGGCAGGTAGCTTTC
>TCONS_00067602
CGGCAACCTGCGAGTTTGCCTTTTTTCCTACAGTTTGTTTACCACTGACGAGGCCTTCTGCTGAGATTTGATGTAACACGAACTAGACAAACAATTGGAATCATATCACATCGTCAAAGTGTCGTGGCCCAATGTGCACTGTAGAAGAACCCTATCAGGCCTGTGACCCATTTTTGGGTCTTGACCCACCAGTTCGGAAGTACAGCTCTAAACGATCTTCTCCATTTGAGGGCTTCTCAGGCATCTGGTTCTCATGCAGaGTGAGTGGAGTGAAAAATGagaggaaagaaagagagaaatggaTTGTGACGGAGGTAGCGAGGGTAATAGGATTGAGCCTGGACTCTGCGGGGTTGAGCTGCCCTCCTAACCGGACTCACTTCCTCTTCTCTCCTCTTCCCCACTGCGAGGTCAACCAGTCGTCCATCAGATCGCTGGCTAATCCTTTCACAATGATTGAGTTGGACAAGTTTCTGAGACCAAAAGCGTAAAGAAGACGATGAATGAAAGAGAGATCACACCCAATAGATGAGATCGCTGGCCGGATGTGCATTTCTATATATGAGGGCTTGCTGATGGTAGCTCTCTGGGCTGGAGTCTGACAGATGGAGCCAGAACTTCCCTGCTCTCTTCTGGATTT
>TCONS_00067603
GACGAGGCCTTCTGCTGAGATTTGATGTAACACGAACTAGACAAACAATTGGAATCATATCACATCGTCAAAGTGTCGTGGCCCAATGTGCACTGTAGAAGAACCCTATCAGGCCTGTGACCCATTTTTGGGTCTTGACCCACCAGTTCGGAAGTACAGCTCTAAACGATCTTCTCCATTTGAGGGCTTCTCAGGCATCTGGTTCTCATGCAGaGTGAGTGGAGTGAAAAATGagaggaaagaaagagagaaatggaTTGTGACGGAGGTAGCGAGGGTAATAGGATTGAGCCTGGACTCTGCGGGGTTGAGCTGCCCTCCTAACCGGACTCACTTCCTCTTCTCTCCTCTTCCCCACTGCGAGGTCAACCAGTCGTCCATCAGATCGCTGGCTAATCCTTTCACAATGATTGAGTTGGACAAGTTTCTGAGACCAAAAGCGTAAAGAAGACGATGAATGAAAGAGAGATCACACCCAATAGATGAGGTGAGTGAGGATCTCATGAGATGTTTGTTGCCTGAATGGACTGAAGCTTAATGTGCAGGAAATGAACAGGCTGGCATGTTAAGTTCAGTCTTGTGTATGTGCTATGTGGCACAGCATGAGGAAGAGGGGCCCACAGTACCATGATAAGGCTAAGAAGACAGGTACGCATGAAAGTATAGGATTAAATAAggcacacaaagaaaaaaaaaaaccttgaatgCTAACCACTTATTTACTTGTAATTTGCTTATTTTGCTATTTGCTTCTTTAATGGTATTTATGAATAAACTTATGTAAAAAG
>TCONS_00067604
ACGAACTAGACAAACAATTGGAATCATATCACATCGTCAAAGTGTCGTGGCCCAATGTGCACTGTAGAAGACATCTTCAGTCTAGTGGATTTATTCTATCCAAGAACCCTATCAGGCCTGTGACCCATTTTTGGGTCTTGACCCACCAGTTCGGAAGTACAGCTCTAAACGATCTTCTCCATTTGAGGGCTTCTCAGGCATCTGGTTCTCATGCAGaGTGAGTGGAGTGAAAAATGagaggaaagaaagagagaaatggaTTGTGACGGAGGTAGCGAGGGTAATAGGATTGAGCCTGGACTCTGCGGGGTTGAGCTGCCCTCCTAACCGGACTCACTTCCTCTTCTCTCCTCTTCCCCACTGCGAGGTCAACCAGTCGTCCATCAGATCGCTGGCTAATCCTTTCACAATGATTGAGTTGGACAAGTTTCTGAGACCAAAAGCGTAAAGAAGACGATGAATGAAAGAGAGATCACACCCAATAGATGAGGTGAGTGAGGATCTCATGAGATGTTTGTTGCCTGAATGGAC

Function

GO:

id name namespace
GO:1904184 positive regulation of pyruvate dehydrogenase activity biological_process
GO:1990918 double-strand break repair involved in meiotic recombination biological_process
GO:0043229 intracellular organelle cellular_component
GO:0030504 inorganic diphosphate transmembrane transporter activity molecular_function
GO:0004741 [pyruvate dehydrogenase (lipoamide)] phosphatase activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000105572

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00067601 False 697 lncRNA 0.49 4 25339756 25523412
TCONS_00067602 False 640 lncRNA 0.48 4 25409156 25523467
TCONS_00067603 False 788 lncRNA 0.44 3 25470202 25523421
TCONS_00067604 True 531 lncRNA 0.47 4 25470462 25523390

Neighbor

gene id symbol gene type direction distance location
XLOC_034734 CU464085.1 coding downstream 48604 25291033 ~ 25291152 (-)
XLOC_034733 badb coding downstream 205903 25129520 ~ 25133853 (-)
XLOC_034732 MAJIN coding downstream 213544 25120226 ~ 25126212 (-)
XLOC_034731 gpha2 coding downstream 227354 25109700 ~ 25112402 (-)
XLOC_034730 arl2 coding downstream 290379 25047219 ~ 25049377 (-)
XLOC_034736 dysf coding upstream 34808 25558275 ~ 25697285 (-)
XLOC_034737 CU467013.2 coding upstream 239717 25763184 ~ 25763298 (-)
XLOC_034738 CU467013.1 coding upstream 267762 25791229 ~ 25791355 (-)
XLOC_034739 cd99l2 coding upstream 355086 25878553 ~ 25895472 (-)
XLOC_034740 BX005022.2 coding upstream 373152 25896619 ~ 25930594 (-)
XLOC_034727 BX511061.1 non-coding downstream 485858 24840701 ~ 24853898 (-)
XLOC_034720 NA non-coding downstream 749891 24580967 ~ 24589865 (-)
XLOC_034707 CR388231.6 non-coding downstream 1269860 24058768 ~ 24069896 (-)
XLOC_034702 NA non-coding downstream 1390071 23946001 ~ 23949685 (-)
XLOC_034742 NA non-coding upstream 464947 25988414 ~ 25995689 (-)
XLOC_034743 NA non-coding upstream 496598 26020065 ~ 26021046 (-)
XLOC_034748 NA non-coding upstream 616608 26140075 ~ 26156272 (-)

Expression


Co-expression Network