XLOC_034730 (arl2)


Basic Information

Item Value
gene id XLOC_034730
gene name arl2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 25047219 ~ 25049377 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00067591
CATAGTAACGCTTCCTTGTTTCCAGTATGGCTTTGCACTGAAGGCATGCGatatttatttaagaaatattttcatttattacgTTAGTTAATGCGTGATTTCAGACAGTATTGTGTATTTCATCTACGCGCTCGCGATGGGTTTACTGACTATCTTGAAGAAGATGAAACACAAGGAGCGTGAAATGCGTCTACTCATGCTTGGTCTTGATAATGCGGGGAAAACAACTATCCTAAAGAAGTTCAACGGCGAAGATGTCAGCACAATCTCTCCAACATTAGGCTTCAACATCAAGACTCTTGAGCACAGAGGGTTTAAGCTGAACATCTGGGATGTGGGTGGTCAAAAGTCATTGAGATCGTACTGGAGGAATTATTTCGAGAGCACAGATGGACTGGTGTGGGTAGTGGACAGTGCTGACAGACTGAGACTGGACGACTGCAGAAAAGAGCTGAATGCCTTACTACTAGAAGAGCGATTAGCAGGAGCCACTCTGTTAGTTTTTGCCAACAAGCAAGACCTACCTGGTGCTTTATCAAAAGATGGCATTCGAGAGGTTTTAGCCCTTGATGATATTAAGACCCATCACTGGTGTATTGTGGGATGCAGTGCTGTAACAGGCGAGAATCTGCTTTCAGGTGTGGATTGGCTACTAGATGATATTGCAGCTCGGATCTTTACAACGGACTAATGGACACACATTTAGCCTTTAAATGGACAGTAAAGGAGCAGCATGTTGGACTGCACGTGTAATGCAAATGTGCTGAAGATAGTGGTCACaaacttaaaaaatattgttaagcAGCTGTGAAAAACTAATTTACCATAAATACACAACTGTTTCACAAAATCTGCTGGGGTATCTTGTTCCATTTAAAGCTTCTGCTGTTTAAATAGTTACAGCTCAGTGAAGCCTTTCTCTTATCGATGTTACAAATAGGTGGGCAGTTAATTTTTCCATGAATCCTTCAGATCTGGATTTCAACTTCACAAAAGACCATTAAAAAGACTTTGCATTAAAA
>TCONS_00067592
ACGCTTCCTTGTTTCCAGTATGGCTTTGCACTGAAGGCATGCGatatttatttaagaaatattttcatttattacgTTAGTTAATGCGTGATTTCAGACAGTATTGTGTATTTCATCTACGCGCTCGCGATGGGTTTACTGACTATCTTGAAGAAGATGAAACACAAGGAGCGTGAAATGCGTCTACTCATGCTTGGTCTTGATAATGCGGGGAAAACAACTATCCTAAAGAAGTTCAACGGCGAAGATGTCAGCACAATCTCTCCAACATTAGGCTTCAACATCAAGACTCTTGAGCACAGAGGGTTTAAGCTGAACATCTGGGATGTGGGTGGTCAAAAGTCATTGAGATCGTACTGGAGGAATTATTTCGAGAGCACAGATGGACTGGTGTGGGTAGTGGACAGTGCTGACAGACTGAGACTGGACGACTGCAGAAAAGAGCTGAATGCCTTACTACTAGAAGAGCGATTAGCAGGAGCCACTCTGTTAGTTTTTGCCAACAAGCAAGACCTACCTGGTGCTTTATCAAAAGATGGCATTCGAGAGGTGAGTCTTCACATTGCATGTCACAACTAAAATAAGGATTAAGTAAATATGCTAGTTTCTGATTAATCTCTCCATCTGCCTAGGTTTTAGCCCTTGATGATATTAAGACCCATCACTGGTGTATTGTGGGATGCAGTGCTGTAACAGGCGA
>TCONS_00067593
AGTAACGCTTCCTTGTTTCCAGTATGGCTTTGCACTGAAGGCATGCGatatttatttaagaaatattttcatttattacgTTAGTTAATGCGTGATTTCAGACAGTATTGTGTATTTCATCTACGCGCTCGCGATGGGTTTACTGACTATCTTGAAGAAGATGAAACACAAGGAGCGTGAAATGCGTCTACTCATGCTGTATCTTTTCGCACAACTGAATTCAAGCGGATAGTCATGTACATTAGGTACATTTGTAAACAACATGATAAACTGCCGgtgttttgtattgtttgtatTCACTACAATGCATATACTTTCTAACAAGTGTCATTTTCTCAGAAAATGTGATGTAATGTGTAATGTGATGTTTATGTCACCTGTGATGCTGTCGAGGGTCCTTGACGTTTCTTTTCAGTGGTCTTGATAATGCGGGGAAAACAACTATCCTAAAGAAGTTCAACGGCGAAGATGTCAGCACAATCTCTCCAACATTAGGCTTCAACATCAAGACTCTTGAGCACAGAGGGTTTAAGCTGAACATCTGGGATGTGGGTGGTCAAAAGTCATTGAGATCGTACTGGAGGAATTATTTCGAGAGCACAGATGGACTGGTGTGGGTAGTGGACAGTGCTGACAGACTGAGACTGGACGACTGCAGAAAAGAGCTGAATGCCTTACTACTAGAAGAGCGATTAGCAGGAGCCACTCTGTTAGTTTTTGCCAACAAGCAAGACCTACCTGGTGCTTTATCAAAAGATGGCATTCGAGAGGTGAGTCTTCACATTGCATGTCACAACTAAAATAAGGATTAAGTAAATATGCTAGTTTCTGATTAATCTCTCCATCTGCCTAGGTTTTAGCCCTTGATGATATTAAGACCCATCACTGGTGTATTGTGGGATGCAGTGCTGTAACAGGCGA

Function

symbol description
arl2 Predicted to enable GTP binding activity. Predicted to be involved in protein folding. Predicted to be active in cytoplasm and microtubule cytoskeleton. Orthologous to human ARL2 (ADP ribosylation factor like GTPase 2).

GO:

id name namespace
GO:0031116 positive regulation of microtubule polymerization biological_process
GO:0015630 microtubule cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins
ko04031 GTP-binding proteins

ZFIN:

id description
ZDB-GENE-041010-19 Predicted to enable GTP binding activity. Predicted to be involved in protein folding. Predicted to be active in cytoplasm and microtubule cytoskeleton. Orthologous to human ARL2 (ADP ribosylation factor like GTPase 2).

Ensembl:

ensembl_id ENSDARG00000069496

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00067591 False 1022 mRNA 0.41 5 25047219 25049377
TCONS_00067592 False 700 lncRNA 0.43 4 25047617 25049370
TCONS_00067593 True 921 lncRNA 0.41 3 25047617 25049374

Neighbor

gene id symbol gene type direction distance location
XLOC_034729 rcor2 coding downstream 51579 24979833 ~ 24995640 (-)
XLOC_034728 adad2 coding downstream 171798 24862471 ~ 24875421 (-)
XLOC_034727 BX511061.1 coding downstream 193321 24840701 ~ 24853898 (-)
XLOC_034726 fam113 coding downstream 208362 24830576 ~ 24838857 (-)
XLOC_034725 otub1b coding downstream 218332 24815809 ~ 24828887 (-)
XLOC_034731 gpha2 coding upstream 60323 25109700 ~ 25112402 (-)
XLOC_034732 MAJIN coding upstream 70849 25120226 ~ 25126212 (-)
XLOC_034733 badb coding upstream 80143 25129520 ~ 25133853 (-)
XLOC_034734 CU464085.1 coding upstream 241656 25291033 ~ 25291152 (-)
XLOC_034735 CU929416.1 coding upstream 290379 25339756 ~ 25523467 (-)
XLOC_034720 NA non-coding downstream 457354 24580967 ~ 24589865 (-)
XLOC_034707 CR388231.6 non-coding downstream 977323 24058768 ~ 24069896 (-)
XLOC_034702 NA non-coding downstream 1097534 23946001 ~ 23949685 (-)
XLOC_034701 CR388231.5 non-coding downstream 1140726 23902484 ~ 23906493 (-)
XLOC_034737 CU467013.2 non-coding upstream 713807 25763184 ~ 25763298 (-)
XLOC_034738 CU467013.1 non-coding upstream 741852 25791229 ~ 25791355 (-)
XLOC_034742 NA non-coding upstream 939037 25988414 ~ 25995689 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000026_01384408_01386103 ARL2 coding CI01000026 null 1384364 ~ 1386103 (-)