XLOC_034747 (snapc2)


Basic Information

Item Value
gene id XLOC_034747
gene name snapc2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 26116103 ~ 26125092 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00067622
CTGTTCTTACAACCACAAAGCGAGCAGTCTTGTGCTATATGGGATATGACTTGTGTATTTAGCAACTATGAAACCTCCACGTCGTCAGCGAACTGTACCATCACGCTTCCATAAAACCCCTGAGCAAGAACAGATAGATAGTGCCAGATCACTCTGCAAAGGATGGAATCGCAAAGACCTCCACAGCTTCTTGCAGGCTTTAAAACAGCAGCAGGATTTTGAATCTGAAATAGATCTGACTGAGATTCAAAAGAAGATTCCTCAGCGTTCTCTCAAACAGATTGAAAACCTGATAAACAAAGTGAAGTTGCGTGTGCTACAGAAGGTGTTTAAACAGGTCAAGAGTCAGAGGAAAAAGGAACGCAAGGCTAAAGTTCCCATTGAAACCTGGGGAGAAATGGTACAGAAAATCTCTACATCTCATGGGAAGACTATTTCCGCTGCCTTTTCCCAGaTGCTTGTGGTTGCTGCCACCGAGCCCTGTAGCCTGATGCACTCTGAACCTCCACACCCCGTTACACAAACACCTGTTTTCTCCCGTCTTTACCCTGCTCACACCCCTAACACCACTTCACGGCCTACCACCTCTGGCGTGAGCCCAAGCTCCAGTGTTTCCACTGCCTCAGCCGTATCATTCATTCGGCCTGACTCTAGTTCAAGCGCTGCTGGCCACATTGGCAAATCTGATACGGTATCGAGCAGTTTACATCAAGAGCCAGTCATGCCTGAAGCATCCACACCCACATCAAGTTCCAGCCAGTCGCAATCAGAAGCAGAAGCAGCAGTGTCCAGTCCTGTGTCCAGCAGACCATCTCCATCAACTTCCTCAAATAAGCCCAGTCCAATTTCGTTGGAACTGCTAGGTCACGATTACCCATGCAAACCAAGAATAATGAAGAGCGTTGTGAACTTTGACAAGATTTATGCATATTTAAGTGACATGGACTCGAAAACCTGCAGTTCAGCTCTTTCTTCAATGGAGTGTGCAGTGCTGCTGGATCTGCTGATGTGTTTGCCTGAGGAGCTCCCGTTACTGGACTGCAAGGGGCTTCAACATCATCTCCTCCAGTTACACTCGCAGCTCTCCAAGCCCACAGTGAAGCCAGAATCCTATTCAAATGGCCCACTTTCTGGTGAAGCTAACAGCTCTACATCAGCACAGAAGCCTAGCGCTGCTGCCGGATCCAGTGAAAAGCATGGACCAGTGAAGGACAGTGAAGACTGGGCCTCGGCTGGCATCTGTCCTCTCAATCCTCTGTCAGTTCCAGTAACTTTGCTGAAAAGAAAATCTGTGGATTGTGATAAATGACATGGTTTTCCAGGAACAGTTGAATTGGGATTGGGTTGAGCCTGGTTTGTCAGGTATTGTTTTACTAGAGTTTAGTGAATTCTTCCAGATGAGGATTCTGTTTCAAAAAAGTTTGTTATAAAACCAAGATGAGAAAGTGAATGTGAACGTTGAACCATGATTCTTCAAATTGTGGTGAATCTTATTTTGTATATAATTGATGTATATTTGTGAGTTTCAGTCTGTAATCTATTTTGAATGCAATGCTAAAAAAGGTCAGTTAAACAAAGGTGTATCTTTTATTTGTCAGTTTAGCCAAACAGTGTTCATGTCATACCCcatcattcattttttatatcttttgattaaatttttcccaaattttCCAAAACTGCAGCTCTGTTGATTCCTAAATGGTGGAACTTAGAAATAATCATTCatagtttattattttcattctgCTTCTACTGCAGTTAACAAGTCAATGGAATGTTCAtgtaaaacaaacatataaataaaaaaaatatatatattttgtcatttta

Function

symbol description
snapc2 Acts upstream of or within intrahepatic bile duct development. Is expressed in brain and liver. Orthologous to human SNAPC2 (small nuclear RNA activating complex polypeptide 2).

GO:

id name namespace
GO:0035622 intrahepatic bile duct development biological_process

KEGG:

id description
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-120328-2 Acts upstream of or within intrahepatic bile duct development. Is expressed in brain and liver. Orthologous to human SNAPC2 (small nuclear RNA activating complex polypeptide 2).

Ensembl:

ensembl_id ENSDARG00000036473

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00067622 True 1833 mRNA 0.43 5 26116103 26125092

Neighbor

gene id symbol gene type direction distance location
XLOC_034746 ache coding downstream 28296 26077153 ~ 26087807 (-)
XLOC_034745 zgc:92664 coding downstream 39133 26073114 ~ 26076970 (-)
XLOC_034744 rnaseka coding downstream 66775 26048033 ~ 26049328 (-)
XLOC_034743 NA coding downstream 95057 26020065 ~ 26021046 (-)
XLOC_034742 NA coding downstream 120414 25988414 ~ 25995689 (-)
XLOC_034748 NA coding upstream 14983 26140075 ~ 26156272 (-)
XLOC_034749 NA coding upstream 101335 26226427 ~ 26230153 (-)
XLOC_034750 ap1s1 coding upstream 119969 26245061 ~ 26263206 (-)
XLOC_034751 serpine1 coding upstream 140492 26265584 ~ 26270014 (-)
XLOC_034752 NA coding upstream 150683 26275775 ~ 26281717 (-)
XLOC_034738 CU467013.1 non-coding downstream 324748 25791229 ~ 25791355 (-)
XLOC_034737 CU467013.2 non-coding downstream 352805 25763184 ~ 25763298 (-)
XLOC_034735 CU929416.1 non-coding downstream 592636 25339756 ~ 25523467 (-)
XLOC_034754 NA non-coding upstream 205246 26330338 ~ 26330695 (-)
XLOC_034755 NA non-coding upstream 210385 26335477 ~ 26341952 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000026_02320946_02326011 NA coding CI01000026 null 2320766 ~ 2326011 (-)