XLOC_034749


Basic Information

Item Value
gene id XLOC_034749
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 26226427 ~ 26230153 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00069211
caactttatttatttctctttgtgTAGCAAAACTAGTCATCAACATGCGGTTATTTACATCCAGCAAACGCATGTTTATTATGTTACGTACAATATACATCTAGAAAGGACATAAACAGTTTTTTCCTCACACAAGACTCAACGGCATTTTTATGTGGATACACTAgtcattcatcttttttttttttgtatttttttcaatgcTTGTAATGTCTTCAGAGAAGCAACACATTTTAGATGCAAGTTTACAGTAACGTGCAGAAACTTTACTCCTTCAGTGGTTCAGCCCACcatccattttgttttCTTTATATAATAAAGTTTATGAGTTTGAGAACAAACCTCAAACCATTCTGACAAAATGCTGCTCATCTGAAAGGGGGAAGAGAGTGTTTAAGGCAATTAAAAGTAGTATTCAAAACATCTTCTATGAAATAATAAATTTGTCTCTTTAGAAATCGTTGGAATGTATGAATGTCCTTTGCACCAACTTcattttttttgagtaaaaaacAATGATATAAACACATTGAAGGAAAAAATTCAAATGCAGACAGCGATAAGAAACTAATTCTATGTACAAGACTTAGCGTGTGTCCTCTTTGTTTCACAAGGGAACGCACAAATGGTAAATGCTCAAGCAGAATACTCTGAGGTACAAGTAAGACTTAATACATTTTGGtgtacagaataaataaaatgaatatttccACCATTATGGCACTGTGATGGTTTATCATCTCTGATTTAATCTGTTTTCACGTTCTATTAAAGGTgctgttagaatttttttttttgctatcccTCTACATTATGATCAACAATATTGACCACTGGGATCTGAAATGTCCATAACAtacaaaacaaaatcataaaGAAATGAAATAAGATTTAGTGGAGATGCTTCCAAAATAATGAAAAGTCTTTCAAGACAACATCTTGAATGTTTTTGCATGGGATGAAAACATGGTGTTTCATGCTTTCGGGTATCTGCTCCTTCATAAAGGCCTTCTGGGAGTCTGCAGAACTTGAGTTGGGTATATGAGCACCCTTTCCTCTTACCACTCCAGTGGCTTTGCTGATCTTTCAGTCTCTCCAGGGGGAGGATGGTGGAAGTTGTAATTTAAGATGGACGTGAAGATCCTGAATGTTCTTAAGGGTAAACTTTGGATCTGAAACGAATAGATGAGAGCGGAGGAACTTCTTTCGGCAGAAGAAACCAGAACTTGATAAGTTGGCCATGAACAGTCTTTAAGTTGTTCTTTCTTCTTTCactttcttctcctcctcctcttccttttcATCCCTCTGTTTTTCCACCAGTTCGCTTATTGAAACATCCGGGGATGTTTCATGAAGACCCTCTCGATGAAGTTCTCCAGCTCCTCTTCACTGTCCTGTGGAGGCTGCCTCAGCGGACTGTAGTAATCATCCTCCCTGGTGACTACAGGAGCTCGGGCTGGGTAATAAAAGGACGGCCAACGACGTGGAGGTGACCGGGGTTTAGGCATGGGAACAGCTTTGAAAGTCCGAGGGTGAGGGAAGTAGAGGTTCCTCTGGAAGGCAGGTTGGACTCTTTGGCGAGGCTGCGCCCAAGGACGGGACTTCCGTCTGGGGGAGTAATCAAAGTCATAGTCCAGTGAGTTTCCCAGAACATCATTAAGTGAGAAAGAGGGCTTGGAATAGTAGCGGGACTTTGGTTTTGGAGGTGGGATGTAGACGGGGTAGTAGCCTCGGTAGGGTTTTTGATAGGAGTTGTAGGAAGGGTAGGTACGAAAGGGCCACTGTTGCCTTGCCCACATGTCTTGCTTGCTGGGCTTGACCGAGGCCCTGTCTTTGAACCAGGCTTTCAATGGGTTGGTGTTTGGTTGAGGAGGCTTCGAGGGAGGAGGTTTACGTAACACTGTTGAAGGTGCAGCGGGGGCTGGAGGCGGCACAAGAGGATGTTGCCATGGCAGATTTTCAGGAgcatcttttttcttcttcttctccacATCATTAATGATGTCCACCACATCGTCTGCTGGAAGATGCAGTTTGCTGGAGATCTCAATCAACTTATCAATAGTCTGTGGGTCAAtgtcctcatcatcatcattagtGTCCTCATCAGAGCGCTTATCTTCAGCACCATTGTTGTCTTGGTACTTTTTCTTGTCTTGTTTTACAATGTACTTCAGAAGCATGTCAGATGCAATATCTGCAAGCTTCTCCTCCTCTGCTTTGGCTCTTTGAGCCTCTGCTGCTTGTCTGCGTACCTCCTCTTGCTCAGCTTTGGCCCGTGTTTCTTCTTCTTCAGGGCTTAGCTGTTCTTCATCCTCCTGATCTTCCTCATCTTCTTCCTCTGGGTCAGCAAGGTTGTTGCTAAAGTCATCCATGAAGTTGCCCCCTCTTTGTAAAGGCTGAACTCTGTTTTTCTCTTGTTCGAGCTGCCACTTTAACTTCTTCTTGGACAAGGCTAGGTCATTGCCTTTAGCTTTAGGCTTGATCTCATTGTTCATGAGGCCATTGCGGTCCAGGTAATCGAAATACTCCCCACGGCTCTCCCTCTGTCTGGTGTCACGCTCTCTCTTAGCAGCTGTGCTATAGCTCTGAAACTCCTCCAGCATAGTCTCCAGATTCTTCACCTCCTCAGGACTCAGctgctcttcctcctcctctgctTTTCCTCCCTCCGGCTCCTGCCTCTCCTCCTCCTTGGTCACGTCCTCTTGTGTGGCCTCCTCCTGCGGAGCCACCTGCTCCTTAATGGGTACCGTCTGGCTGGTGGTGCGGCTTGTCACTTTCTCCGTCATCCTTTCCTCCTCTTCAGCCCTTTTTTTCTcctcttcctctctttctttctcatcGTTTCCTTGCGCAGCTGCCATCACCAGTTCCAGTTCTTTGTGACCATCTCTGTCTCTGTCTGCGCCCTGAAGATCCCTCTCCTTTTCCCCTTCAGTTCCCTCATCTTCTCGTTCACTCATCTTTTCTTTCTGGTTTAGTGCCCCGAGAAGAACTGCTGCTAGGGTTCTAGGATCCACGTCTTTAAAAagctcatcatcatcttcattttcATCATGTGTCGTGCCCTGCTCCTCGGCTGGTTGAGTATATAGAGCCTGTTGCTGAGCAGAGGAGGCAGCTGCATAGTTTTCACTTACTGTGTTTCTGTCTGTTGTCACTGGACTAAAGGCTGCAGGCTTGACTGTGAGACTGAATAACATGAACAGGAAAATGATGGGAATATTTGAAGTGTGTTGGCACCAGGTCATGACCGCACATATGTGTGAACCTGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00069211 True 3281 lncRNA 0.44 2 26226427 26230153

Neighbor

gene id symbol gene type direction distance location
XLOC_034748 NA coding downstream 70155 26140075 ~ 26156272 (-)
XLOC_034747 snapc2 coding downstream 101335 26116103 ~ 26125092 (-)
XLOC_034746 ache coding downstream 138620 26077153 ~ 26087807 (-)
XLOC_034745 zgc:92664 coding downstream 149457 26073114 ~ 26076970 (-)
XLOC_034744 rnaseka coding downstream 177099 26048033 ~ 26049328 (-)
XLOC_034750 ap1s1 coding upstream 14908 26245061 ~ 26263206 (-)
XLOC_034751 serpine1 coding upstream 35431 26265584 ~ 26270014 (-)
XLOC_034752 NA coding upstream 45622 26275775 ~ 26281717 (-)
XLOC_034753 zgc:77439 coding upstream 67016 26297169 ~ 26308242 (-)
XLOC_034754 NA coding upstream 100185 26330338 ~ 26330695 (-)
XLOC_034743 NA non-coding downstream 205381 26020065 ~ 26021046 (-)
XLOC_034742 NA non-coding downstream 230738 25988414 ~ 25995689 (-)
XLOC_034738 CU467013.1 non-coding downstream 435072 25791229 ~ 25791355 (-)
XLOC_034737 CU467013.2 non-coding downstream 463129 25763184 ~ 25763298 (-)
XLOC_034755 NA non-coding upstream 105324 26335477 ~ 26341952 (-)
XLOC_034756 NA non-coding upstream 110445 26340598 ~ 26341168 (-)
XLOC_034765 NA non-coding upstream 324997 26555150 ~ 26566216 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000026_02400893_02403816 VGF coding CI01000026 null 2399889 ~ 2403831 (+)