CI01000026_02400893_02403816 (VGF)


Basic Information

Item Value
gene id CI01000026_02400893_02403816
gene name VGF
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 2399889 ~ 2403831 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_02400893_02403816.mRNA
GTATAAAAGGACACAAAAATGTAATGTAATTTGTAATGTGTAATGAAATGATGAAATGTATTTTATATATATATATATATATATTGTTTGTCTTTATATTAAAAAGGGAAAAAAACGAAAAAAATGCAGTAATGTAGAAAATAAAAGTATAACAATTATTTGTGAGGGAAGTAATAAAACTGATTAAAACCACTTTAGTGATACTGAATATTGCAATGATGACTTTTATAATTATTGATGAAGGTGACGGGTATGATCAATGGCACAGCTCGCATAATGATTATTACCACGCCCTTGCTCATGCTTTCATCATCTTTCTCATCACCATAGCATTAGATACCCAAAATAACAACGTCGAGTCCAATCACAAAAGCGCACGAGAGACACTGACATAAAAAAAAAAATTTTGCTTCTGCTTGCCTTGACTTTTGCCTGTTGGAGTCCAATTTGACGTATTTTACATACTTGTAAGTATGGAGCAAAGAAATGTTGACATCAAATTTAACAGCAGAGTATTCATTATCTGTTTTCATGTCTTTCAAATGTTGTTGATTGGGTTCAATTTGTGATAGACGTTTAAATCTTAAATCTAATAGTCTCAAAGCAGAAGATTATAGGCCTACTTGAGGACAAGGCGTCTTAGAGTCGGATTACTTGCGTTCTTTGTTGATAAGAGCTCCCTGGAGTGCTCTGTCGTTGGAGGCAGTGGAGGGTGTTACTGTTAGAGCTGTTGTTACATCGTGGAGACACGACTCTATAAGACCAAAAAAAAAAAAAAAAAGTTGATCTTTTCAAATTTGAAAGGAGCTACAGACTGTTGTTTATTAATAAAAATGAGAAAATTGTGCATGCCAAACAGCTGTCAAACTTTAGATGTGTAAACCCATGCATCGTAAGCCAGTGGGCACATATTTGCGATTGCTGCAGTGTTTTCTTGTGCAACTAGGCAACGAGTGGAGTTTTAACTAAATAACCAGATTTTTACCATAAACATTGGTGTCGTGATGATCAAGCATTACGCGTCAGGATCGCTTAATCTCAGTGTCAGTTTTCATTACAAAATTAAAGTTCAACACATATGTACGGTCATGAGCTGGTGCCAACAAACTTTAAATGTCCCCGTCATTTTCCTGTTCATGTTATTTAGTCTCACAGTCAAGCCTGCAACCTTCAGTCCAGTGACAGCAGCCAGCAACACAGTAAGTGAAAACTATGCAGCATCCTCCTCCTCTGCTCAGCAACAGAGTCAATATACTCAACCACCAGAGGAAAAAGGCTCGCTACATGATGAAAATGAAGAAGATGAGCTTTTCAAAGACGTGGACCCTAGAACCCTAGCAGCGGTCCTTCTCGAGGCCCTCAACCAACCTCAGAAGGAAAAGATGAGTGAACGAGAAGAGGGAATGGAAGTGGAAAGGCAGAGGGATCTTCAGGGTGCAGACAGAGACAGAGATGGTCACAAAGAGCTGGAGCTGGAAGTGAAGAATCTGGAGACTGTGTTAGAGGAATTGCAGAGCTACAGCACAGCCACTAAGAGAGAGCGCGACACGTCCACAGGCCAGAGGGAGAGCCGTGGGGAGTATTTTGATTACCTGGACCGTAATGGTCTCATGAACAACGAGATCAAGCCTAAAGCTAAAGGTAATGACCTAGCCCTGTCCAAGAAGAAGCTAAAGTGGCAACTCGAACAAGAGAAGAACAAAATGCAGCCTTTACAAAGAGGAGGCAACTTCATGGATGACTTTACCAATAACCTTGCTGACCCAGAAGAAGAAGATGAGGAAGATCAGGACGACGAAGAACAGCTAAGCCCTGAAGAAGAGGAAACTCGGGCCAAAGCAGAGCAAGAGGAGGTACGCAGACAGGCAGCAGAAGCACAAAGAGCCAAGGCGGAGGAGGAAAAGCTTGCAGACATTGCATCTGACATGCTCCTGAAATACATTGTGAAACAGGACAAGAAAAAGTACCAAGACAACAATGGTGCAGAAGATAAGCGCTCTGATGAGGAGGACACTAGTGATGACGATGATGACATTGACCCACAGACCATTGATAAGTTGATTGAGATCTCAAGCAAGCTGCATCTTCCTGCTGATGATGTGGTGGACATTATTAACGATGTGGAGAAAAAGAAGAAAAAAGATGCTCCTGAAAATCTCCCATGGCAACGTCCTCTCGTGCCGCCTCCAGCCCCCATTGCACCTTCCACACTGTTACGTAAACCTCCTCCCTCAAAGCCTCCTCAGCCGAACATGAACCCATTAAAAGCCTGGTTCAAAGACAGGACCTCAGTCAAGCCCAGCAAGCAAGAAATTTGGACGAGGCAGCAGTGGCCCTTTCGTACCTACCCTTCCTTCAAGTTCTATCAAAAACCCTACAGAGGGTATTACCCCATCTACATCCCGCCTGCAAAACCAAAATCCCGCTACTATTCCAAGCCCTCTTTCGCCCTCAATAATGTCCTGGGAAACTCACTGGACTATGACTTTGATTACTCCCCCAGACGGAAGTCCCGTCCCTGGGCGCAGTCTCGCCAAAGAGCCCAACCAGCCTTCCAGCGGAACCTCTACTTCCCTCACCCTCGGACTTTCAAAGCCGTACCCATGCCTAAACCCCGGTCACCTCCACGTCGTTGGCCGTCCTTTTATTACCCAGCCCGAGCTCCTGTAGTCACCAGGGAGGATGATTACTACAGTTCGCTGAGGCAGCCGCCACAGGACAGCGAAGAGGAGCTGGAGAACTTCATTGAGAGAGTCTTTATGAAACATCCCCGGATGTTTCAGTGAGCAGACTGGGGAGAA

Function

symbol description
vgf Predicted to enable neuropeptide hormone activity. Orthologous to human VGF (VGF nerve growth factor inducible).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_02400893_02403816.mRNA True 2801 mRNA 0.44 3 2399889 2403831

Neighbor

gene id symbol gene type direction distance location
CI01000026_02351177_02371429 NA coding upstream 28071 2351104 ~ 2371818 (+)
CI01000026_02332785_02336722 NAT16 coding upstream 62943 2332203 ~ 2336946 (+)
CI01000026_02318608_02319349 NA coding upstream 80015 2318608 ~ 2319874 (+)
CI01000026_02249557_02256584 NA coding upstream 142903 2247478 ~ 2256986 (+)
CI01000026_02230639_02246622 ALOX15, ALOX12 coding upstream 152794 2230175 ~ 2247095 (+)
CI01000026_02476591_02498283 NA coding downstream 72760 2476591 ~ 2498501 (+)
CI01000026_02559910_02563125 MPDU1B coding downstream 156012 2559843 ~ 2563679 (+)
CI01000026_02602796_02611957 TNK2B coding downstream 198965 2602796 ~ 2612380 (+)
CI01000026_02650632_02651292 NA coding downstream 246801 2650632 ~ 2651507 (+)
CI01000026_02659356_02660297 NA coding downstream 254774 2658605 ~ 2660829 (+)
G127597 NA non-coding upstream 12306 2387323 ~ 2387583 (+)
G127593 NA non-coding upstream 16548 2383091 ~ 2383341 (+)
G127591 NA non-coding upstream 17936 2381617 ~ 2381953 (+)
G127574 NA non-coding upstream 100054 2299273 ~ 2299835 (+)
G127567 NA non-coding upstream 117531 2282131 ~ 2282358 (+)
G127608 NA non-coding downstream 34243 2438074 ~ 2438370 (+)
G127609 NA non-coding downstream 34563 2438394 ~ 2438730 (+)
G127610 NA non-coding downstream 35054 2438885 ~ 2439176 (+)
G127614 NA non-coding downstream 40986 2444817 ~ 2445051 (+)
G127623 NA non-coding downstream 110400 2514231 ~ 2583751 (+)
G127531 NA other upstream 87754 2309322 ~ 2312135 (+)
G127500 NA other upstream 453450 1931183 ~ 1946439 (+)
CI01000026_00776867_00777588 NEDD8, BRAFLDRAFT_284180, NEDD8L, NEDD8.S other upstream 1622092 776757 ~ 777830 (+)
G126556 NA other upstream 1644726 754791 ~ 755163 (+)
G127979 NA other downstream 1348720 3752551 ~ 3762986 (+)
CI01000026_04327206_04331151 DOK4, DOK5 other downstream 1884042 4327206 ~ 4332085 (+)
G128137 NA other downstream 2026731 4430562 ~ 4431201 (+)
CI01000026_04556074_04556964 FOXB1B, FOXB1, FOXB1A other downstream 2151945 4555776 ~ 4557613 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_034749 NA non-coding NC_007118.7 CM002891.2 26226427 ~ 26230153 (-)