G127623


Basic Information

Item Value
gene id G127623
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 2514231 ~ 2583751 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU145012
CACCACAAAAAAAAAAAAAAAAAAAAAAAAAGAATAGGGAAAGAGGAAAGAATGAGGAAGGGGTCTTAGATCAGATCAGCAACGTTCATGGGCATTTCCTCCACAGTAGTATTGTAGAAGGTTTCAATGTCTCGGAGCGTGCGCTTGTCATCTTCGGTGATCATGTTGATAGCGACGCCCTTTCTACCAAAACGTCCACCACGGCCGATTCTACACAAATAAAGCACCGTTATT
>TU145009
TTTTTTTTTTTTTTTTTTCTTAGCATGTTAAAAATGGGAAATACCTTTATTTCAGACCATTAAAATAAATACTATACAGAGTCCAATGTAGAAAAGATTTAATACATGGCTTCTGTCTCAAAAAGGTTAATAATTATCACATTTGTAATAAATTTGTTTAAAAAAATAGCACTGACCACCCCACATGTAAACCCTACATCCAAACCCACCCAACAAAAGACAGGCATTTTTTTGAACAATACGAAGACATAATGATCTCTATATACTCTACTACTGCAGTTTGGTCCTTTACATATTTAGACCCCTCCAACACAGTTTGGTGAGGTAGGTTATAGGAGCAACACTCCTCAATAGGACTTTGATGCAGAGAAAATCTGAGGCAATACAATGGTGGGTCATTAACCAGCCATACCAACCATTCCAAATTCACTTCTAATGCCTTCAGCCACTCATCCCGCCAGAGTAAAGCCTATTTACAAAAATCAAAAAAGCTACAGCCACGCATACAGGACAACACAAAAGATGTAACAGAAGAATTGGACAGCTTGAGAAAATTACTTGACCACAATTTGCAATTGTAGAATCTGATTTGTTCCCACTAACCAACTTCCTTTTGGACTGAAGCAATTTTTTTTTTCTCTTTTTTTTTTTTTTTTAAATAAAGCAGATCTTAACCTACTCAGATGCTTCTGTAAAAGGAAATGGCAGTGACTTGCAATTTGGAATAAAAGTCCAAGTCCTCCATATAAAACATGAATCACTACATAGTTTACATCCTTTGCCCTGTGCAAAAAACAAAGAAAACAAAAAACCAAACAAAAGAAACTTGTAAATTTAAAGTCACATCTCAAATATGGTTAACCCAACACTATCAAGAAAAGCAGGGTATGTCTCCAATCCATTATGCCAGTCAGTGCATTAACATTTACACCACACATGCAAATAAGCCCTGCAACGCCTCTTGATCAGTAGATGGCACCATTTAAAATGGGTAAGACTAAATGAGCCTTATGAATATTGAGTATTCATTCTGAATAATTGAGAGTTCAATGATGTGGCCAACATACTGGGTTTATGAAAATCACCCCCTCAGAACTGAGAGTCTTAATTTGTGAGGGATTTGCATGAAAAGGGATGTAGGTTGGAATGAGACTAAAGGGAAGAGAGAAAAAAAAAAAAAAAAAAGAATAGGGAAAGAGGAAAGAATGAGGAAGGGGTCTTAGATCAGATCAGCAACGTTCATGGGCATTTCCTCCACAGTAGTATTGTAGAAGGTTTCAATGTCTCGGAGCGTGCGCTTGTCATCTTCGGTGATCATGTTGATAGCGACGCCCTTTCTACCAAAACGTCCACCACGGCCGATTCTACACAAATAAAGCACCGTTATT
>TU145013
TTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTAAATAAAGCAGATCTTAACCTACTCAGATGCTTCTGTAAAAGGAAATGGCAGTGACTTGCAATTTGGAATAAAAGTCCAAGTCCTCCATATAAAACATGAATCACTACATAGTTTACATCCTTTGCCCTGTGCAAAAAACAAAGAAAACAAAAAACCAAACAAAAGAAACTTGTAAATTTAAAGTCACATCTCAAATATGGTTAACCCAACACTATCAAGAAAAGCAGGGTATGTCTCCAATCCATTATGCCAGTCAGTGCATTAACATTTACACCACACATGCAAATAAGCCCTGCAACGCCTCTTGATCAGTAGATGGCACCATTTAAAATGGGTAAGACTAAATGAGCCTTATGAATATTGAGTATTCATTCTGAATAATTGAGAGTTCAATGATGTGGCCAACATACTGGGTTTATGAAAATCACCCCCTCAGAACTGAGAGTCTTAATTTGTGAGGGATTTGCATGAAAAGGGATGTAGGTTGGAATGAGACTAAAGGGAAGAGAGAAAAAAAAAAAAAAAAAAGAATAGGGAAAGAGGAAAGAATGAGGAAGGGGTCTTAGATCAGATCAGCAACGTTCATGGGCATTTCCTCCACAGTAGTATTGTAGAAGGTTTCAATGTCTCGGAGCGTGCGCTTGTCATCTTCGGTGATCATGTTGATAGCGACGCCCTTTCTACCAAAACGTCCACCACGGCCGATTCTACACAAATAAAGCACCGTTATT
>TU145014
TTTTTTTTTTTTTTTTTTCTTTTTTTTAGCATGTTAAAAATGGGAAATACCTTTATTTCAGACCATTAAAATAAATACTATACAGAGTCCAATGTAGAAAAGATTTAATACATGGCTTCTGTCTCAAAAAGGTTAATAATTATCACATTTGTAATAAATTTGTTTAAAAAAATAGCACTGACCACCCCACATGTAAACCCTACATCCAAACCCACCCAACAAAAGACAGGCATTTTTTTGAACAATACGAAGACATAATGATCTCTATATACTCTACTACTGCAGTTTGGTCCTTTACATATTTAGACCCCTCCAACACAGTTTGGTGAGGTAGGTTATAGGAGCAACACTCCTCAATAGGACTTTGATGCAGAGAAAATCTGAGGCAATACAATGGTGGGTCATTAACCAGCCATACCAACCATTCCAAATTCACTTCTAATGCCTTCAGCCACTCATCCCGCCAGAGTAAAGCCTATTTACAAAAATCAAAAAAGCTACAGCCACGCATACAGGACAACACAAAAGATGTAACAGAAGAATTGGACAGCTTGAGAAAATTACTTGACCACAATTTGCAATTGTAGAATCTGATTTGTTCCCACTAACCAACTTCCTTTTGGACTGAAGCAATTTTTTTTTTCTCTTTTTTTTTTTTTTTTAAATAAAGCAGATCTTAACCTACTCAGATGCTTCTGTAAAAGGAAATGGCAGTGACTTGCAATTTGGAATAAAAGTCCAAGTCCTCCATATAAAACATGAATCACTACATAGTTTACATCCTTTGCCCTGTGCAAAAAACAAAGAAAACAAAAAACCAAACAAAAGAAACTTGTAAATTTAAAGTCACATCTCAAATATGGTTAACCCAACACTATCAAGAAAAGCAGGGTATGTCTCCAATCCATTATGCCAGTCAGTGCATTAACATTTACACCACACATGCAAATAAGCCCTGCAACGCCTCTTGATCAGTAGATGGCACCATTTAAAATGGGTAAGACTAAATGAGCCTTATGAATATTGAGTATTCATTCTGAATAATTGAGAGTTCAATGATGTGGCCAACATACTGGGTTTATGAAAATCACCCCCTCAGAACTGAGAGTCTTAATTTGTGAGGGATTTGCATGAAAAGGGATGTAGGTTGGAATGAGACTAAAGGGAAGAGAGAAAAAAAAAAAAAAAAAAGAATAGGGAAAGAGGAAAGAATGAGGAAGGGGTCTTAGATCAGATCAGCAACGTTCATGGGCATTTCCTCCACAGTAGTATTGTAGAAGGTTTCAATGTCTCGGAGCGTGCGCTTGTCATCTTCGGTGATCATGTTGATAGCGACGCCCTTTCTACCAAAACGTCCACCACGGCCGATTCTACACAAATAAAGCACCGTTATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU145012 False 234 lncRNA 0.42 2 2514231 2583751
TU145009 False 1388 lncRNA 0.37 2 2535206 2583751
TU145013 False 773 lncRNA 0.37 2 2535206 2583751
TU145014 True 1394 lncRNA 0.36 2 2535206 2583751

Neighbor

gene id symbol gene type direction distance location
CI01000026_02476591_02498283 NA coding upstream 15730 2476591 ~ 2498501 (+)
CI01000026_02400893_02403816 VGF coding upstream 110400 2399889 ~ 2403831 (+)
CI01000026_02351177_02371429 NA coding upstream 142413 2351104 ~ 2371818 (+)
CI01000026_02332785_02336722 NAT16 coding upstream 177285 2332203 ~ 2336946 (+)
CI01000026_02318608_02319349 NA coding upstream 194357 2318608 ~ 2319874 (+)
CI01000026_02602796_02611957 TNK2B coding downstream 19045 2602796 ~ 2612380 (+)
CI01000026_02650632_02651292 NA coding downstream 66881 2650632 ~ 2651507 (+)
CI01000026_02659356_02660297 NA coding downstream 74854 2658605 ~ 2660829 (+)
CI01000026_02692703_02703519 TP53I11, TP53I11A coding downstream 108952 2692703 ~ 2703741 (+)
CI01000026_02722558_02725907 NA coding downstream 138807 2722558 ~ 2726305 (+)
G127614 NA non-coding upstream 69180 2444817 ~ 2445051 (+)
G127610 NA non-coding upstream 75055 2438885 ~ 2439176 (+)
G127609 NA non-coding upstream 75501 2438394 ~ 2438730 (+)
G127608 NA non-coding upstream 75861 2438074 ~ 2438370 (+)
G127519 NA non-coding upstream 87225 2393683 ~ 2427006 (+)
G127710 NA non-coding downstream 47344 2631095 ~ 2631370 (+)
G127646 NA non-coding downstream 63358 2647109 ~ 2648639 (+)
G127670 NA non-coding downstream 77248 2660999 ~ 2661597 (+)
G127669 NA non-coding downstream 123774 2707525 ~ 2708131 (+)
G127725 NA non-coding downstream 152228 2735979 ~ 2736398 (+)
G127531 NA other upstream 202096 2309322 ~ 2312135 (+)
G127500 NA other upstream 567792 1931183 ~ 1946439 (+)
CI01000026_00776867_00777588 NEDD8, BRAFLDRAFT_284180, NEDD8L, NEDD8.S other upstream 1736434 776757 ~ 777830 (+)
G126556 NA other upstream 1759068 754791 ~ 755163 (+)
G127979 NA other downstream 1168800 3752551 ~ 3762986 (+)
CI01000026_04327206_04331151 DOK4, DOK5 other downstream 1704122 4327206 ~ 4332085 (+)
G128137 NA other downstream 1846811 4430562 ~ 4431201 (+)
CI01000026_04556074_04556964 FOXB1B, FOXB1, FOXB1A other downstream 1972025 4555776 ~ 4557613 (+)

Expression


Co-expression Network