G127670


Basic Information

Item Value
gene id G127670
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 2660999 ~ 2661597 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU145062
TATTTAATCAGAATACATGGCTACTTCAATGGAAAGTTTATGCAGCCAGATGTTGTGGTTATGACATCTGCCAGCAGGGGTTAAAGGCACAATATGTAAGGATTTTGGATTAAAATATCCAAAAACCACTAGAACAGTGTACATATGTTTTTATGTTTTTATCATGCCTCAGAGACAACACTATTTTGTCAAGTAGCTAACATAGCATAATCAGATGCAGCTTTATTTTTAGTAATGGTAAAACAGCATTCTCTCCGTCATACAATATGTTTTAAAGCAACACCATGGAACATTTGCTCACGGTTCCCCCATGTGGCTGATAAGCGCAATTGTCTGTTACCAGTGTCGTAAATACTGTGGCTGTAAATGCGTCCCCGTGGGCAGCGCAATACATGTGAATTTGTTGACTAAGCTGACGGAACCGGCGAATGCAGAAACCGTGTTTGGAAACCATGTCCACCGACCAGGTAAGGTAGCCCGTGTTACACTATTCGTCAGCTGTTGGCTAACTCCACCCAGGCTACGAGTAAAATATGTGACGTATACCGTAAAGCAGGTTGCACTCTTCCGCTGGCAGGGGATGAGCGGGGCTGTGTGTA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU145062 True 599 lncRNA 0.43 1 2660999 2661597

Neighbor

gene id symbol gene type direction distance location
CI01000026_02659356_02660297 NA coding upstream 346 2658605 ~ 2660829 (+)
CI01000026_02650632_02651292 NA coding upstream 9492 2650632 ~ 2651507 (+)
CI01000026_02602796_02611957 TNK2B coding upstream 48619 2602796 ~ 2612380 (+)
CI01000026_02559910_02563125 MPDU1B coding upstream 97320 2559843 ~ 2563679 (+)
CI01000026_02476591_02498283 NA coding upstream 162498 2476591 ~ 2498501 (+)
CI01000026_02692703_02703519 TP53I11, TP53I11A coding downstream 31106 2692703 ~ 2703741 (+)
CI01000026_02722558_02725907 NA coding downstream 60961 2722558 ~ 2726305 (+)
CI01000026_02795613_02801257 TSPAN18, TSPAN18A, TSPAN18B coding downstream 133843 2795440 ~ 2801816 (+)
CI01000026_02928011_02935998 NA coding downstream 266414 2928011 ~ 2936306 (+)
CI01000026_02947832_02950047 RPS13, RPS13.L, RS13 coding downstream 286092 2947689 ~ 2950067 (+)
G127646 NA non-coding upstream 12360 2647109 ~ 2648639 (+)
G127710 NA non-coding upstream 29629 2631095 ~ 2631370 (+)
G127623 NA non-coding upstream 77248 2514231 ~ 2583751 (+)
G127652 NA non-coding upstream 86084 2572994 ~ 2574915 (+)
G127614 NA non-coding upstream 215948 2444817 ~ 2445051 (+)
G127669 NA non-coding downstream 45928 2707525 ~ 2708131 (+)
G127725 NA non-coding downstream 74382 2735979 ~ 2736398 (+)
G127728 NA non-coding downstream 80492 2742089 ~ 2742460 (+)
G127826 NA non-coding downstream 222276 2883873 ~ 2884079 (+)
G127838 NA non-coding downstream 248327 2909924 ~ 2910142 (+)
G127519 NA other upstream 233993 2393683 ~ 2427006 (+)
G127531 NA other upstream 348864 2309322 ~ 2312135 (+)
G127500 NA other upstream 714560 1931183 ~ 1946439 (+)
CI01000026_00776867_00777588 NEDD8, BRAFLDRAFT_284180, NEDD8L, NEDD8.S other upstream 1883202 776757 ~ 777830 (+)
G127979 NA other downstream 1090954 3752551 ~ 3762986 (+)
CI01000026_04327206_04331151 DOK4, DOK5 other downstream 1626276 4327206 ~ 4332085 (+)
G128137 NA other downstream 1768965 4430562 ~ 4431201 (+)
CI01000026_04556074_04556964 FOXB1B, FOXB1, FOXB1A other downstream 1894179 4555776 ~ 4557613 (+)
G128585 NA other downstream 3288216 5949813 ~ 5950122 (+)

Expression


Co-expression Network