RNA id: TCONS_00069211


Basic Information

Item Value
RNA id TCONS_00069211
length 3281
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id XLOC_034749
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 26226427 ~ 26230153 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

caactttatttatttctctttgtgTAGCAAAACTAGTCATCAACATGCGGTTATTTACATCCAGCAAACGCATGTTTATTATGTTACGTACAATATACATCTAGAAAGGACATAAACAGTTTTTTCCTCACACAAGACTCAACGGCATTTTTATGTGGATACACTAgtcattcatcttttttttttttgtatttttttcaatgcTTGTAATGTCTTCAGAGAAGCAACACATTTTAGATGCAAGTTTACAGTAACGTGCAGAAACTTTACTCCTTCAGTGGTTCAGCCCACcatccattttgttttCTTTATATAATAAAGTTTATGAGTTTGAGAACAAACCTCAAACCATTCTGACAAAATGCTGCTCATCTGAAAGGGGGAAGAGAGTGTTTAAGGCAATTAAAAGTAGTATTCAAAACATCTTCTATGAAATAATAAATTTGTCTCTTTAGAAATCGTTGGAATGTATGAATGTCCTTTGCACCAACTTcattttttttgagtaaaaaacAATGATATAAACACATTGAAGGAAAAAATTCAAATGCAGACAGCGATAAGAAACTAATTCTATGTACAAGACTTAGCGTGTGTCCTCTTTGTTTCACAAGGGAACGCACAAATGGTAAATGCTCAAGCAGAATACTCTGAGGTACAAGTAAGACTTAATACATTTTGGtgtacagaataaataaaatgaatatttccACCATTATGGCACTGTGATGGTTTATCATCTCTGATTTAATCTGTTTTCACGTTCTATTAAAGGTgctgttagaatttttttttttgctatcccTCTACATTATGATCAACAATATTGACCACTGGGATCTGAAATGTCCATAACAtacaaaacaaaatcataaaGAAATGAAATAAGATTTAGTGGAGATGCTTCCAAAATAATGAAAAGTCTTTCAAGACAACATCTTGAATGTTTTTGCATGGGATGAAAACATGGTGTTTCATGCTTTCGGGTATCTGCTCCTTCATAAAGGCCTTCTGGGAGTCTGCAGAACTTGAGTTGGGTATATGAGCACCCTTTCCTCTTACCACTCCAGTGGCTTTGCTGATCTTTCAGTCTCTCCAGGGGGAGGATGGTGGAAGTTGTAATTTAAGATGGACGTGAAGATCCTGAATGTTCTTAAGGGTAAACTTTGGATCTGAAACGAATAGATGAGAGCGGAGGAACTTCTTTCGGCAGAAGAAACCAGAACTTGATAAGTTGGCCATGAACAGTCTTTAAGTTGTTCTTTCTTCTTTCactttcttctcctcctcctcttccttttcATCCCTCTGTTTTTCCACCAGTTCGCTTATTGAAACATCCGGGGATGTTTCATGAAGACCCTCTCGATGAAGTTCTCCAGCTCCTCTTCACTGTCCTGTGGAGGCTGCCTCAGCGGACTGTAGTAATCATCCTCCCTGGTGACTACAGGAGCTCGGGCTGGGTAATAAAAGGACGGCCAACGACGTGGAGGTGACCGGGGTTTAGGCATGGGAACAGCTTTGAAAGTCCGAGGGTGAGGGAAGTAGAGGTTCCTCTGGAAGGCAGGTTGGACTCTTTGGCGAGGCTGCGCCCAAGGACGGGACTTCCGTCTGGGGGAGTAATCAAAGTCATAGTCCAGTGAGTTTCCCAGAACATCATTAAGTGAGAAAGAGGGCTTGGAATAGTAGCGGGACTTTGGTTTTGGAGGTGGGATGTAGACGGGGTAGTAGCCTCGGTAGGGTTTTTGATAGGAGTTGTAGGAAGGGTAGGTACGAAAGGGCCACTGTTGCCTTGCCCACATGTCTTGCTTGCTGGGCTTGACCGAGGCCCTGTCTTTGAACCAGGCTTTCAATGGGTTGGTGTTTGGTTGAGGAGGCTTCGAGGGAGGAGGTTTACGTAACACTGTTGAAGGTGCAGCGGGGGCTGGAGGCGGCACAAGAGGATGTTGCCATGGCAGATTTTCAGGAgcatcttttttcttcttcttctccacATCATTAATGATGTCCACCACATCGTCTGCTGGAAGATGCAGTTTGCTGGAGATCTCAATCAACTTATCAATAGTCTGTGGGTCAAtgtcctcatcatcatcattagtGTCCTCATCAGAGCGCTTATCTTCAGCACCATTGTTGTCTTGGTACTTTTTCTTGTCTTGTTTTACAATGTACTTCAGAAGCATGTCAGATGCAATATCTGCAAGCTTCTCCTCCTCTGCTTTGGCTCTTTGAGCCTCTGCTGCTTGTCTGCGTACCTCCTCTTGCTCAGCTTTGGCCCGTGTTTCTTCTTCTTCAGGGCTTAGCTGTTCTTCATCCTCCTGATCTTCCTCATCTTCTTCCTCTGGGTCAGCAAGGTTGTTGCTAAAGTCATCCATGAAGTTGCCCCCTCTTTGTAAAGGCTGAACTCTGTTTTTCTCTTGTTCGAGCTGCCACTTTAACTTCTTCTTGGACAAGGCTAGGTCATTGCCTTTAGCTTTAGGCTTGATCTCATTGTTCATGAGGCCATTGCGGTCCAGGTAATCGAAATACTCCCCACGGCTCTCCCTCTGTCTGGTGTCACGCTCTCTCTTAGCAGCTGTGCTATAGCTCTGAAACTCCTCCAGCATAGTCTCCAGATTCTTCACCTCCTCAGGACTCAGctgctcttcctcctcctctgctTTTCCTCCCTCCGGCTCCTGCCTCTCCTCCTCCTTGGTCACGTCCTCTTGTGTGGCCTCCTCCTGCGGAGCCACCTGCTCCTTAATGGGTACCGTCTGGCTGGTGGTGCGGCTTGTCACTTTCTCCGTCATCCTTTCCTCCTCTTCAGCCCTTTTTTTCTcctcttcctctctttctttctcatcGTTTCCTTGCGCAGCTGCCATCACCAGTTCCAGTTCTTTGTGACCATCTCTGTCTCTGTCTGCGCCCTGAAGATCCCTCTCCTTTTCCCCTTCAGTTCCCTCATCTTCTCGTTCACTCATCTTTTCTTTCTGGTTTAGTGCCCCGAGAAGAACTGCTGCTAGGGTTCTAGGATCCACGTCTTTAAAAagctcatcatcatcttcattttcATCATGTGTCGTGCCCTGCTCCTCGGCTGGTTGAGTATATAGAGCCTGTTGCTGAGCAGAGGAGGCAGCTGCATAGTTTTCACTTACTGTGTTTCTGTCTGTTGTCACTGGACTAAAGGCTGCAGGCTTGACTGTGAGACTGAATAACATGAACAGGAAAATGATGGGAATATTTGAAGTGTGTTGGCACCAGGTCATGACCGCACATATGTGTGAACCTGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00069210 lncRNA downstream 70155 26140075 ~ 26156272 (-) True XLOC_034748
TCONS_00069209 lncRNA downstream 205381 26020065 ~ 26021046 (-) True XLOC_034743
TCONS_00069208 lncRNA downstream 230738 25988414 ~ 25995689 (-) True XLOC_034742
TCONS_00067602 lncRNA downstream 702960 25409156 ~ 25523467 (-) False XLOC_034735
TCONS_00069212 lncRNA upstream 45622 26275775 ~ 26281717 (-) True XLOC_034752
TCONS_00069213 lncRNA upstream 67563 26297716 ~ 26299410 (-) False XLOC_034753
TCONS_00069214 lncRNA upstream 70642 26300795 ~ 26306554 (-) False XLOC_034753
TCONS_00067635 lncRNA upstream 74387 26304540 ~ 26306554 (-) True XLOC_034753
TCONS_00069215 lncRNA upstream 100185 26330338 ~ 26330695 (-) True XLOC_034754
TCONS_00067622 mRNA downstream 101335 26116103 ~ 26125092 (-) True XLOC_034747
TCONS_00067621 mRNA downstream 138620 26077153 ~ 26087807 (-) True XLOC_034746
TCONS_00067620 mRNA downstream 149457 26073114 ~ 26076970 (-) True XLOC_034745
TCONS_00067618 mRNA downstream 177099 26048033 ~ 26049328 (-) False XLOC_034744
TCONS_00067624 mRNA upstream 14908 26245061 ~ 26263206 (-) False XLOC_034750
TCONS_00067623 mRNA upstream 14908 26245061 ~ 26263206 (-) False XLOC_034750
TCONS_00067625 mRNA upstream 14909 26245062 ~ 26263206 (-) False XLOC_034750
TCONS_00067626 mRNA upstream 15794 26245947 ~ 26262978 (-) False XLOC_034750
TCONS_00067627 mRNA upstream 15809 26245962 ~ 26263183 (-) True XLOC_034750
TCONS_00067608 other downstream 435072 25791229 ~ 25791355 (-) True XLOC_034738
TCONS_00067607 other downstream 463129 25763184 ~ 25763298 (-) True XLOC_034737
TCONS_00067600 other downstream 935275 25291033 ~ 25291152 (-) True XLOC_034734
TCONS_00067584 other downstream 1372529 24840701 ~ 24853898 (-) True XLOC_034727
TCONS_00067552 other downstream 2033347 24187581 ~ 24193080 (-) False XLOC_034711
TCONS_00067631 other upstream 70642 26300795 ~ 26304876 (-) False XLOC_034753
TCONS_00067641 other upstream 215867 26446020 ~ 26457812 (-) False XLOC_034760
TCONS_00067650 other upstream 283669 26513822 ~ 26513960 (-) False XLOC_034763
TCONS_00067676 other upstream 1927401 28157554 ~ 28157668 (-) True XLOC_034779
TCONS_00067677 other upstream 2050018 28280171 ~ 28280285 (-) True XLOC_034780

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000026_02400893_02403816.mRNA True 2801 mRNA 0.44 3 CI01000026 2399889 ~ 2403831 (+)