LOC110498210 (osr1)


Basic Information

Item Value
gene id LOC110498210
gene name osr1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 59220036 ~ 59227518 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955215.1
AGACCGCAGGACAGTAACAGAAGGCGTCTTCACCAGAGTCACTACAGAAGTTCTACACGCAACTATTTTGGACAGCTGTTGAACTACACGCGCGTACAATCTAAACTCGATTTGAACATGCCGGGAAAGTTGTCTTACGAAGCCCAAAACTTTCTCTGAACTACATTCAACTTTGAACGTTTTTTTCCAAGACGTTTTGCATCGGACCATCCGCAGGTTTTCAACTCCAGGACCATTCCGGATCCATAGGACCGACATCTGCGCTGAGGGAATCCCATTGCGATTCGAGTGATCAGTAGTGACACCAATCATGGGCAGCAAAACTCTTCCAGCCCCggttcccctccacccctctctgcaGCTGGCCAACTACTCCATCCTCCAGGCCTCCAATGGCTTCCAGCTGCCCACGGACCAGGTCCCTGGCATCTATAGCTTCAGCGCACTGCACGCCATCCACCTCCACCAGTGGACCCTGGGCTACCCTCCCTTTGGTGTCCCCCGCTGCACTTTCTCCAAGCTCCCAGCCCTGATGGACGGCCGCTTCCCCGGCTTGCCTTCCATCCCCATCTTCCCCCACCTGGTCCAGCACAAGGACCAGGCCACTGCTGCCGCCACAGCAGCTACCACCATGAATCTCCTTCAGGGCTCCAAGAACAAGCCCCAGCCACGCTTCGACTTTGCCAACCTGGCCACCGCCGCCACCCAGGAGGACCCGTTGAAGGCAGAGGACCTGAGCATAACAGGGGCAGCCGCCGCCACTTCTCCTCGCCATGGCGGGCTAGGCTGTCTCATAGATGTAGCCAAGCTGTCGTCGCCCGAGCGCAAGCCTAGCCGTGGTCGCCTTCCCTCCAAGACCAAGAAGGAGTTTGTGTGCAAGTTCTGCGGCCGCCATTTCACCAAGTCCTACAACCTGCTTATCCACGAGCGGACGCACACGGACGAGAGGCCGTACACCTGTGACATCTGCCACAAGGCATTCCGGAGGCAGGACCACCTCCGAGACCACAGGTACATCCATTCCAAAGAGAAGCCCTTCAAGTGCCAGGAGTGTGGAAAGGGATTTTGTCAGTCCAGAACTCTAGCTGTCCACAAAACGCTGCACATGCAGGTGAAGGAACTAAAGCCATCCAAGATTAAGTGATGTCAATACATGAAAAAAGAGACTAGGGGACACTGGAAACAATAACGGTGAAGACTATAAAGGAGAACAAGACAAAATTACCAAAGACGGGGGACATTGTAGAGCTGACCAAAGACGGGGGGACATTGTAGAGCTGACCAAAGACGGGGGGAGTTTGTGGAGCTGATCAAAGACGGGGGGACATTGTGGAGCTGACCAAAGACAGGGGACATTGTAGAGTTGACCAAAGACAGGGGACATTGTGGAGCTGACCAAAGACAGGGGACATTGTAGAGCTGACCAAAGACAGGGGAGTTTGTGGAGCTGACCAAAGACAGGGGAGTTTGTGGAGCTGACCAAAGACGGGGGGACATTGTAGAGCTGACCAAAGACAGGGGGACATTGTGGAGCTCAAGTGCCTGGAACATATAATGAGTAGAACATCTCTGAACTTGAACCAAACTGAAGTTCTCTGAACAGAAGAAAAGTGATATAAAAAGTTAACTGTTCACCAACAATTCACCAGCCAAGGAAGGAAGCCGTAGTGTTCATCGTGGGGAATGATTCTTCAGAGAGATTTGAAAATCCTGGATCTCTATGATGTATCCAGACAATATCCAGGAGCACCTTGTACTAGATCTAAGttgtttttccacatttagttaagAGATAATTAGGCTTAATGACTTTGAGGCAGTGTATTGGTTGTCCACGATGAAGCCCAATGGGGCGAATGGATCATACATCATAGCTGTATGGAATGTGATCTTGACCTCTCTGACAAAGTTGACCTCTCAGACATTCCGAAAGACTCTTGCTTTTGAtcaaaatgacatttttttttaaagggacatTTACGAGTCTAAAGCAGTCTttgttaaaaaacaaaacaaaaaacaaaaaaacaactaaaTTGGTTAAAGTCATGTCAGCGTAATGTTATTCCACTTCCAAAGCTTACATTCCAATGTTATTTTTTTGTATAATTGTATTTTTTGCACTTTAACctgattattgattatttacatatATCACTGGATTCCTAAAACTTATTTTGAGAAAATAAATAGTAATTTTCTAAA

Function

symbol description
osr1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in angioblast cell differentiation; negative regulation of transcription by RNA polymerase II; and pronephric nephron tubule development. Acts upstream of or within several processes, including nephron development; pectoral fin development; and regulation of nodal signaling pathway. Predicted to be active in nucleus. Is expressed in several structures, including endoderm; germ ring; head; mesoderm; and vasculature. Orthologous to human OSR1 (odd-skipped related transcription factor 1).

NR:

description
protein odd-skipped-related 1

GO: NA

KEGG:

id description
K09215 OSR, ODD; odd-skipped

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955215.1 True 2205 mRNA 0.48 3 59220036 59227518

Neighbor

gene id symbol gene type direction distance location
LOC110498208 LOC106608166 coding upstream 197717 59015463 ~ 59022319 (+)
prlh2r LOC106608506 coding upstream 315871 58895252 ~ 58904165 (+)
LOC110498202 LOC106608562 coding upstream 327295 58883806 ~ 58892741 (+)
disp2 disp2 coding upstream 351063 58855731 ~ 58868973 (+)
degs2 degs2 coding upstream 571284 58639045 ~ 58648752 (+)
rdh14a LOC106607934 coding downstream 255424 59482942 ~ 59488394 (+)
LOC110498214 LOC106607310 coding downstream 512040 59739558 ~ 59760715 (+)
LOC110498234 LOC106607246 coding downstream 546450 59773968 ~ 59799587 (+)
ankef1b LOC106609265 coding downstream 587083 59814601 ~ 59839856 (+)
LOC110510484 LOC106607199 coding downstream 638074 59865592 ~ 59961717 (+)
G1644304 NA non-coding upstream 5499 59214303 ~ 59214537 (+)
G1644296 NA non-coding upstream 11561 59208130 ~ 59208475 (+)
G1644267 NA non-coding upstream 34780 59185023 ~ 59185256 (+)
G1644258 NA non-coding upstream 41377 59178076 ~ 59178659 (+)
G1644245 NA non-coding upstream 49688 59170135 ~ 59170348 (+)
G1644313 NA non-coding downstream 295 59227813 ~ 59228201 (+)
G1644371 NA non-coding downstream 50854 59278372 ~ 59279194 (+)
G1644382 NA non-coding downstream 58998 59286516 ~ 59286746 (+)
G1644383 NA non-coding downstream 59865 59287383 ~ 59288215 (+)
G1644408 NA non-coding downstream 83542 59311060 ~ 59311359 (+)
G1644280 NA other upstream 23023 59196684 ~ 59197013 (+)
G1644123 NA other upstream 162813 59054523 ~ 59057223 (+)
LOC110498189 klhdc1 other upstream 921801 58293310 ~ 58298259 (+)
G1642993 LOC106611338 other upstream 1043551 58164477 ~ 58176485 (+)
G1642565 NA other upstream 1537483 57656349 ~ 57682553 (+)
G1644569 NA other downstream 381082 59608600 ~ 59609394 (+)
G1644651 NA other downstream 520466 59747984 ~ 59748345 (+)
LOC110498402 LOC106604468 other downstream 1156003 60382983 ~ 60392450 (+)
plaat1l LOC106611413 other downstream 1171389 60398860 ~ 60402461 (+)
chrna2a LOC103467111 other downstream 1245605 60462967 ~ 60475546 (+)

Expression


Co-expression Network