degs2 (degs2)


Basic Information

Item Value
gene id degs2
gene name degs2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 58639045 ~ 58648752 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574823.2
GGAGGAGCTTTTTTGGTCGCACACCTTTCACCTTTACGGTTGagagggtgtgtttgtaaagtagTGTGTGTAGGTGAGGCACGCATTGCCACTGCGCTCCCGCGGGCATCAAGAGCATCGAAATGGATAAGACAGGTGAACGGGGAGACTTTGAATGGGTCTACAATGATCAGCCTCATACTTCACGAAGAAAAGAAATATTAGCAAAATACCCAGAGATCAAGTCCCTGATGGGGCCTGACCCCCAGTTGAAGTGGGTGGTGACAGGGATGGTCCTCACCCAGCTTCTGGCTTGCTACATGGTCCACGACCTCCCCTGGAAGTGGGTGTTCTTCTGGTCATACGGCTTCGGCGGCTGCATCAACCACTCGCTGACCCTCGCCATTCACGATATCTCCCACAACGTTGCGTTCGGCAACAAGCTGGCGCGCCTCAACCGCTGGTTCGCCATATGGGCCAACCTCCCCATTGGACTGCCCTACTCGGCCTCGTTCAAGAAGTACCACATCGACCACCACCGCTACCTGGGTGGCGATGGCCTAGATGTGGACATCCCCACGGACGCGGAGGGCTGGTTCTTTTGCACACCCCTGCGGAAGGTCCTGTGGCTCTTCCTCCAGCCATTGTTCTACGCACTGCGCCCTCTAGTGGTGAACCCCAAGCCAGTCTCCAGACTAGAGATGATGAATGCCGCTGTTCAATTTGCAGTGAACTTTGTGATATTCTACCTATGGGGGCTGAAGCCAATTGTTTACCTCATAGCCGGGTCCATTTTATGCATGGGCCTACATCCCATCTCTGGACACTTCATAGCGGAGCACTACATGTTCTTGAAGGGACACGAGACATACTCCTACTACGGCTCACTGAACCGGATCACCTTCAACGTGGGTTACCACATGGAGCACCATGACTTCCCCAGTATACCTGGCAGTAAGCTGCCTCAGGTGAAGAAGATGGCAGCAGAGTACTACGACTCCCTACCACAGCACACTTCCTGGACCCGGGTGTTGTGGGACTTTGTCTTTGATGACAGCATCGGTCCCTACACCAGGATCAAGCGGGAATATAAGCTGGTCAAGCAGGAGTAGGTGCCACATCAAAACACTTTCCCCAATATTCAGTGGTACTGATTGTCACAGTGAACCATTGGTTTCAGACAGTGGCACTCCAGGCTCCTTTTCACCTCGTTTTATCATGTGATTTACTTGACAATAGCACACGTGGGCAGTCAAAAGACACAATGTCAATCATTAGGTTTACCATACTGTGAGTGTGCAGAACAGTGCAGAGAATGAAACATTAAAACTTACTTTGTAGTAAGAGGAGCTGTATTTCAGTGAAGCTCTGTTTGATGCTCACCACACAAAAGTTGTTTTTAATCAAGAAAATAAATAGATAATATTGCTAACAATGTTTCTAACAGAAATGTAATTGAATAAAAAGTTATGTTATTACATGTGTGAGGTTTCTGTGTGTGAATATACATCTGTAATGCTAGAACTATGTAACAGGTATTTCTTTACAAGAGCTATTTTAAGAACAAAAGCACAACTTCTATATCAGGTTTTGTATAGCCTACACCGTACGTgtacattatatattttttttactattgtaACATCTGAtggaaaatgttttttattttttattgtcatAATAATTGAAGAATGAAACACACCACTccatactgtagacaggagacagGTCTATGGTTTGGTTTAAATTCATTTACTTTCCGATTTTTGAAATTTAATTCAGAACTTAGTCAAAGTGAATATGTCACAAAAGATATTAAATCATATTTTCccccaatattttttttctcctttcatcACAAAAAACGTTTGAATTGATTTATGTATACTTTTAATTTATTTTGCAACTGGCTCCATTTTCACATATCAAATTCAAGTTCAaccttaaagtaactgtccagtgaaaatctcacttttaaatgTCCATATTCTGTTAAATCATATCCAAATAATGTTGATGACTCATCCTACACTCGtatgtggccaaagcataaattggagagaaaaaaaacatt

Function

symbol description
degs2 Predicted to enable sphingolipid delta-4 desaturase activity and sphingosine hydroxylase activity. Predicted to be involved in ceramide biosynthetic process and sphinganine metabolic process. Predicted to act upstream of or within sphingolipid biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Orthologous to human DEGS2 (delta 4-desaturase, sphingolipid 2).

NR:

description
PREDICTED: sphingolipid delta(4)-desaturase/C4-hydroxylase DES2

GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function

KEGG:

id description
K04712 DEGS; sphingolipid 4-desaturase/C4-monooxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574823.2 True 2053 mRNA 0.44 3 58639045 58648752

Neighbor

gene id symbol gene type direction distance location
mis18bp1 mis18bp1 coding upstream 13119 58606103 ~ 58625926 (+)
LOC110498192 LOC106610665 coding upstream 72339 58382544 ~ 58566706 (+)
dnaaf2 klhdc1 coding upstream 330871 58300100 ~ 58308174 (+)
LOC110498189 klhdc1 coding upstream 340786 58293310 ~ 58298259 (+)
wdr20a LOC106611292 coding upstream 379653 58251569 ~ 58259392 (+)
disp2 disp2 coding downstream 206979 58855731 ~ 58868973 (+)
LOC110498202 LOC106608562 coding downstream 235054 58883806 ~ 58892741 (+)
prlh2r LOC106608506 coding downstream 246500 58895252 ~ 58904165 (+)
LOC110498208 LOC106608166 coding downstream 366711 59015463 ~ 59022319 (+)
LOC110498210 osr1 coding downstream 571284 59220036 ~ 59227518 (+)
G1643532 NA non-coding upstream 21721 58617119 ~ 58617324 (+)
G1643530 NA non-coding upstream 26049 58612778 ~ 58612996 (+)
G1643516 NA non-coding upstream 33522 58599582 ~ 58605523 (+)
G1643511 NA non-coding upstream 61231 58577568 ~ 58577814 (+)
G1643586 LOC106608927 non-coding downstream 69899 58718651 ~ 58722660 (+)
G1643591 NA non-coding downstream 87742 58736494 ~ 58739850 (+)
G1643594 NA non-coding downstream 92756 58741508 ~ 58741882 (+)
G1643645 NA non-coding downstream 185044 58833796 ~ 58834011 (+)
G1643658 NA non-coding downstream 227067 58875819 ~ 58876093 (+)
G1642993 LOC106611338 other upstream 462560 58164477 ~ 58176485 (+)
G1642565 NA other upstream 956492 57656349 ~ 57682553 (+)
G1642062 NA other upstream 1362268 57275053 ~ 57276777 (+)
G1641935 NA other upstream 1495120 57135826 ~ 57143925 (+)
G1644123 NA other downstream 405771 59054523 ~ 59057223 (+)
G1644280 NA other downstream 547932 59196684 ~ 59197013 (+)
G1644569 NA other downstream 959848 59608600 ~ 59609394 (+)
G1644651 NA other downstream 1099232 59747984 ~ 59748345 (+)
LOC110498402 LOC106604468 other downstream 1734769 60382983 ~ 60392450 (+)

Expression


Co-expression Network