LOC110498202 (LOC106608562)


Basic Information

Item Value
gene id LOC110498202
gene name LOC106608562
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 58883806 ~ 58892741 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955202.1
gaagaagaagaagaagaagaagaagaagaagatggaaaaggaagaagatgatgatgattTCATTTCGCATCAGCTGTAGCATAGATATTAGAGAAAAGCCTATCTGGCTGTAGGCCAGACAAACCTAATCACACTGATAACCTTATTTTTGTGATCTTTTTGTTTTCATCCCTCACAGTAGGTTGTGGCAATTCACCTTTTGGAGTGTCGTCTGCCAATAAACATTgaaggggaagaagaagaagaagaagataaagATGATGATGATTTCATTTGGCCTCAGCTGATGCAGAGATATTACAGAAATGTATCTCTGGCTGTAGGACgATCACTGTATCTACATGAAGATGATTGACGATTTCGAGAGTCATAAGGCCCGGTCCAGCAGAGATCTGTGGTCAGAGATCTGCTGGAGCCTGCCTGACGtgcaggtggaggaggaagatcAAGGCCGAGGAGAGGATAATGCTGCTCTGTTCAAAGATTCATTCCAACCTTCACATGTTGGCAATGACCTGCAATCTAATGGCATGTCTATGAGTTTCTCCTCTCACAGCGTCTGGGAACCTATGGAAGACTCGGATGTCTACATTGCTAGTTTAGAGAATCGTCTGAAGAGAATAAAGGGCCAGTGTACTGAGGTGACATCCAGGGAGATGCTGCGCTCCCTATCTCAGGCCAAAACAGAATGCTGGGATAGATTCTTGCACGACGCTCAGAGCTCGGAAATCTTTCAGGAGGACGAGCTAGATCAGAGTACCCTGGAGCATCTAAAGCGTTGGCTGGTACCTGAGAAAGTGGCCATCAGCGCTGAGGAGCTGGAGTGTCTCCTCCTGCCGTCACTGAGCCGAGAGCAGACCTCCACGGACCAATCACAGAGCAGATCAGAGGCAGCCGCTCAGAACCACGAAGAGGACAAGAGTCCCATACCTGAGAAATAGCTTCCTGTTCACCGCAGACATTTTTGTACGTTATCATGTGTTATTCATGTTCAGAAACATGATTGAATTTCCTGTACTGTCATTATTAGGTTATGTGTATTTGTCTTTATTATTGAGGAGAAAGAATTCGGTGACATATGGTTGCAAATATTGGATCGGTCCATTTTTTTGTCATGTTACTCCCATCAAATGTTGTTGATTTTATGATATGGTTAGAATAAAAAGCGGTTAATTGTTGGGGTAATATCCCGAAAACCACA
>XM_021574827.2
ATCACTCAAAACACGCCAAAGAAGGATTGCCTTGTTTGGATTTTGTTTGGGATTCTTCCAGCTAGAGGAGcaggctaactagctaacgttaacaaATTAAAGTCCTAGATACTACCTGGTAAAATACTGTTTAGCTGCTCTAAATTGAAGTCGAAGATCACTGTATCTACATGAAGATGATTGACGATTTCGAGAGTCATAAGGCCCGGTCCAGCAGAGATCTGTGGTCAGAGATCTGCTGGAGCCTGCCTGACGtgcaggtggaggaggaagatcAAGGCCGAGGAGAGGATAATGCTGCTCTGTTCAAAGATTCATTCCAACCTTCACATGTTGGCAATGACCTGCAATCTAATGGCATGTCTATGAGTTTCTCCTCTCACAGCGTCTGGGAACCTATGGAAGACTCGGATGTCTACATTGCTAGTTTAGAGAATCGTCTGAAGAGAATAAAGGGCCAGTGTACTGAGGTGACATCCAGGGAGATGCTGCGCTCCCTATCTCAGGCCAAAACAGAATGCTGGGATAGATTCTTGCACGACGCTCAGAGCTCGGAAATCTTTCAGGAGGACGAGCTAGATCAGAGTACCCTGGAGCATCTAAAGCGTTGGCTGGTACCTGAGAAAGTGGCCATCAGCGCTGAGGAGCTGGAGTGTCTCCTCCTGCCGTCACTGAGCCGAGAGCAGACCTCCACGGACCAATCACAGAGCAGATCAGAGGCAGCCGCTCAGAACCACGAAGAGGACAAGAGTCCCATACCTGAGAAATAGCTTCCTGTTCACCGCAGACATTTTTGTACGTTATCATGTGTTATTCATGTTCAGAAACATGATTGAATTTCCTGTACTGTCATTATTAGGTTATGTGTATTTGTCTTTATTATTGAGGAGAAAGAATTCGGTGACATATGGTTGCAAATATTGGATCGGTCCATTTTTTTGTCATGTTACTCCCATCAAATGTTGTTGATTTTATGATATGGTTAGAATAAAAAGCGGTTAATTGTTGGGGTAATATCCCGAAAACCACA

Function

NR:

description
uncharacterized protein C15orf57 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955202.1 False 1201 mRNA 0.44 4 58883806 58892741
XM_021574827.2 True 1030 mRNA 0.45 4 58884393 58892741

Neighbor

gene id symbol gene type direction distance location
disp2 disp2 coding upstream 14833 58855731 ~ 58868973 (+)
degs2 degs2 coding upstream 235054 58639045 ~ 58648752 (+)
mis18bp1 mis18bp1 coding upstream 257880 58606103 ~ 58625926 (+)
LOC110498192 LOC106610665 coding upstream 317100 58382544 ~ 58566706 (+)
dnaaf2 klhdc1 coding upstream 575632 58300100 ~ 58308174 (+)
prlh2r LOC106608506 coding downstream 2511 58895252 ~ 58904165 (+)
LOC110498208 LOC106608166 coding downstream 122722 59015463 ~ 59022319 (+)
LOC110498210 osr1 coding downstream 327295 59220036 ~ 59227518 (+)
rdh14a LOC106607934 coding downstream 590201 59482942 ~ 59488394 (+)
LOC110498214 LOC106607310 coding downstream 846817 59739558 ~ 59760715 (+)
G1643662 NA non-coding upstream 5018 58878569 ~ 58878788 (+)
G1643659 NA non-coding upstream 7409 58876194 ~ 58876397 (+)
G1643658 NA non-coding upstream 7713 58875819 ~ 58876093 (+)
G1643645 NA non-coding upstream 49795 58833796 ~ 58834011 (+)
G1643594 NA non-coding upstream 141924 58741508 ~ 58741882 (+)
G1643669 NA non-coding downstream 8616 58901357 ~ 58901652 (+)
G1643672 NA non-coding downstream 12537 58905278 ~ 58905483 (+)
G1644009 NA non-coding downstream 33019 58925760 ~ 58926052 (+)
G1644019 NA non-coding downstream 45158 58937899 ~ 58938307 (+)
G1644035 NA non-coding downstream 61049 58953790 ~ 58954847 (+)
LOC110498189 klhdc1 other upstream 585571 58293310 ~ 58298259 (+)
G1642993 LOC106611338 other upstream 707321 58164477 ~ 58176485 (+)
G1642565 NA other upstream 1201253 57656349 ~ 57682553 (+)
G1642062 NA other upstream 1607029 57275053 ~ 57276777 (+)
G1641935 NA other upstream 1739881 57135826 ~ 57143925 (+)
G1644123 NA other downstream 161782 59054523 ~ 59057223 (+)
G1644280 NA other downstream 303943 59196684 ~ 59197013 (+)
G1644569 NA other downstream 715859 59608600 ~ 59609394 (+)
G1644651 NA other downstream 855243 59747984 ~ 59748345 (+)
LOC110498402 LOC106604468 other downstream 1490780 60382983 ~ 60392450 (+)

Expression


Co-expression Network