G1643659


Basic Information

Item Value
gene id G1643659
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 58876194 ~ 58876397 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1880276
gtacaatgacaccttagtttttaagccacggatttctaatcccttaatattattgttggatctaatCTTagcagctaacatttcgatggcaataataagtagatatgccgatagtggacaaccttgttttactcctctagacaGTTTAAAAcgttctgagatgtagccattatttactattttacacctagggttactatacat

Function

NR:

description
Retrovirus-related Pol polyprotein LINE-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1880276 True 204 lncRNA 0.34 1 58876194 58876397

Neighbor

gene id symbol gene type direction distance location
disp2 disp2 coding upstream 7221 58855731 ~ 58868973 (+)
degs2 degs2 coding upstream 227442 58639045 ~ 58648752 (+)
mis18bp1 mis18bp1 coding upstream 250268 58606103 ~ 58625926 (+)
LOC110498192 LOC106610665 coding upstream 309488 58382544 ~ 58566706 (+)
dnaaf2 klhdc1 coding upstream 568020 58300100 ~ 58308174 (+)
LOC110498202 LOC106608562 coding downstream 7409 58883806 ~ 58892741 (+)
prlh2r LOC106608506 coding downstream 18855 58895252 ~ 58904165 (+)
LOC110498208 LOC106608166 coding downstream 139066 59015463 ~ 59022319 (+)
LOC110498210 osr1 coding downstream 343639 59220036 ~ 59227518 (+)
rdh14a LOC106607934 coding downstream 606545 59482942 ~ 59488394 (+)
G1643658 NA non-coding upstream 101 58875819 ~ 58876093 (+)
G1643645 NA non-coding upstream 42183 58833796 ~ 58834011 (+)
G1643594 NA non-coding upstream 134312 58741508 ~ 58741882 (+)
G1643591 NA non-coding upstream 136344 58736494 ~ 58739850 (+)
G1643586 LOC106608927 non-coding upstream 153534 58718651 ~ 58722660 (+)
G1643662 NA non-coding downstream 2172 58878569 ~ 58878788 (+)
G1643669 NA non-coding downstream 24960 58901357 ~ 58901652 (+)
G1643672 NA non-coding downstream 28881 58905278 ~ 58905483 (+)
G1644009 NA non-coding downstream 49363 58925760 ~ 58926052 (+)
G1644019 NA non-coding downstream 61502 58937899 ~ 58938307 (+)
LOC110498189 klhdc1 other upstream 577959 58293310 ~ 58298259 (+)
G1642993 LOC106611338 other upstream 699709 58164477 ~ 58176485 (+)
G1642565 NA other upstream 1193641 57656349 ~ 57682553 (+)
G1642062 NA other upstream 1599417 57275053 ~ 57276777 (+)
G1641935 NA other upstream 1732269 57135826 ~ 57143925 (+)
G1644123 NA other downstream 178126 59054523 ~ 59057223 (+)
G1644280 NA other downstream 320287 59196684 ~ 59197013 (+)
G1644569 NA other downstream 732203 59608600 ~ 59609394 (+)
G1644651 NA other downstream 871587 59747984 ~ 59748345 (+)
LOC110498402 LOC106604468 other downstream 1507124 60382983 ~ 60392450 (+)

Expression


Co-expression Network