LOC110498222 (LOC106603387)


Basic Information

Item Value
gene id LOC110498222
gene name LOC106603387
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 59996525 ~ 60022616 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955252.1
TCTACGTTTGTGTAGTTTGAAACACGCCTAGTCAGTCGAAAAAGAAAAATGCGCATATTGCCATCGCTTTTGTGTGCGATCCCTTTGGAATAGATATCCACGCGTAAATAACAATTTATTCGTTAAACAATAAACACTTGATTCAAAAtaatcattttttatttgattttattgcGTTTGAGCGAAGCAAGGCCTCAGGTTGTTTATCTGGTCTTTACTTTAGGACAGCGAGGATAACCAGCCTGCCgctctccttccacactgagcCCAAGCCTATACTgactgggtcctgattgtgacaaAGAAGTTCCCTGGGCACCGCAGgagagatggcatcagtgaaaGAAAGCAGTCAAACTCTCCGGCTGAATATCATCACAAAAGATATAGAAGAGGAAGTGAAGATTTGGGAATGCGATGATTACGcagAAGAGAGTCCAGAGATGGCGTCAGTGAAGTTGGCAGACAGCAGTCAAACACTTGGGCTGAATGTCACCTttaaagaagaggagaagggtGACTTTGGGGAATCTGATCATGGAGAGACCCCTAACTCCTCTGACCAAGTTGAGACATTTCCTGCTCCAGTCAAGCATCGTCGGAAAGTGAGTAAAGTGAAGAGGTCTCACCACTGTCCCCACTGTGAGAAGATTTTCCCTTTCCTTTCATATCTTGAAAGACACGTGCGAAAACATtccggagagaagccttactcttgctctgactgtgggatgAGTTTCTCTCAACTGAGTGGCTTGAATGtgcaccagcgaacacacactggagagaagcctcacCACTGTCCTCACTGTGAGGAGAGTTTCCCATTCCCATCATATCTTGAAAGACACCTGCGAAAACAttcaggagagaagccttattcctGCTCTGTCTGTGGGATGAGTTTCTCTCAACGCAGTGGCTTGAACGTGCACCAGCGatcacacactggagagaagcctcacCACTGTCCTCACTGTGAGGAGAGTTTCCCATTCCCATCATATCTTGAAAGACATCTGCGTAAACattctggagagaagccttattcctgctctgactgtgggatgAGTTTCTCTCAACTGAGTGGCTTGAATGtgcaccagcgaacacacactggagagaagcctcacCACTGTCCTCAGTGTAAGGAGAGTTTCCCATTCCCATCATATCTTGAAAGACACATGCGAAAACattctggagagaagccttattcctGCTCGGTCTGTGGGATGAGTTTCTCGCAACTGAGTGGCTTGAATGtgcaccagcgaacacacactggagagaagcctcaccgctgtcctcacTGTGAGAAGAGTTTCCCATTCCCATCATATCTTGAAATACACCTGCGGAAACATTCTGGAGAGAAACcgtactcctgctctgactgtgggaaatgcttcacaacatcaagTCATCTAACCTCTCATCGGATaactcacacaggggagaagccttactcttgctctgactgtgggaagagtttcccATTCCCATCATATCTTGAAAGACACCTGCGGAAACATTCTGGCGAGAAGCCGTactgctgctctgactgcggGAAATGCTTCACCACATCAAGCAATCTAACACTTCATCAGAgtgcacacaggggagaagccttactaATGATCTGACGAGTGTGGAAGAATCTCATCTGGACAGCCTGAACCTTCGCAAGTaaaacacacaggagaaaaacctTACTCCTGCTCTAACCGCGGGGAAGGATTTCACCTCACCAAGTCATCTAACCGTTCATAAGAGAGTGCACACAGGAAAAAAAAGCCTTATCAATGTTCTGAATGTGGGTAGCTTCAAACACCACCAGCGAATAAGTACAGGAGAGAAGTCGTACTCTTGTTCTGACTGTGAGAAGTGCTTCACCTCATTGAATCAGTTAGGTGTTCATCATAGCACTATATCTGCTACGTCTTTGCTGATCAATTACATTGTAAAATGACATTGTGCTGCCCTTTTTATAGACCTGTGGAAGTCTTTCGATTGTGTTGACCAATTTTGGCGGCAggtagagagttggactagtaatcgactggttgcaagatcgaatcccccgagctgaccaggtaaaaatctgtcgttctgcccctgaacaaggcagttagcccactgttcctaggccgtcattgaaaataagaatttgttcttaactgacttgcctacttaaataaaaatTGGCCTGGGTCAGGCAACCTGCATTTGGTTTGAAAACAACCTGACCGAGAGGACACTTCTGATGGTGTTAAGTAAAGTTTCCTTTAGTACTAAacggtgccccccccccctcccccccctcccctgggTCGATTTTGGGCCCTGTACTTTTTGCTATCTATATAAACACTATTGGTTTGTAAGAAATTGTAACCTCCACTTGTATGTGGACGATACTGTTGCGCATTCTGTTCACAAGGCTCGTCCAGAACTACAATCTGCCTTATGTTTTGCAGAAAGCCTTTGTTCAACTGGAGTTGGTACTTAATGCAGGTAACCAGGTATGTTATTTTCAAAAACACTTAAGTGTATTTGATGTtttatccatatatatatatatattggatgGTGACAACAATTGATAGTGTCCCTGTttattataataatacatgggACTTATTTTCAATGTCGCTTTTACCATTGTGgaaactaaacagaaaacaagacgACATCAAGACAACGGCAGGAAGAAACAAAACCGTGAGAGGGGCTTAAAGAAGGGAAACGAGTGTGAGGGAGGAGTTCGGCTGCAGAGTTCTGAACCATTTGGAGCTTATGGAGGGAGCTTGCATTGATGCCTGGAGATTAGTGAGTTGCAGTAAGTCGAGACGGGAGATGATAAATGCTTGGATCTGGGTTTCAGCGACAGATGTAGTGGTGGAAAGAGGGTGCAGTCCAGGATAACACCTGGGTTGAGGCAGAGACAATGGTATCATCAATGGTTAGGTTAACAATTTATGGCAACTGGATGTTGAAGTGATGGAGTATCTGGCCAAGGGGGAGGATGTAGATGAAGAGTAAGGGGCCCAGCACAGAGCCCTGAGTGACACCCAATGTGAAACTGCAGCTGTGTGAGGTATGGCCATTGAGTGAGATGTAGTGGGTCTGGTTGGTGAGGTATGATTGTAGCCAGGAGAGTGCCCTCAACACCCAGACCCGCTAGCCTGATGACCAGGACTTGTTGGCTCAACGTGTCAAAGACAAATCAGGATGTTGAGGGCACTGACATCAGCAGAGGTTAGGTCATTGATGACTGACGGGGGCGGAATCCAGACTGGATGGGCTCAAATAGGTTATTGTTCAGGAGGTGGGTTTGTAGTGGAGAGGCAGCTGGCCTTTTCAAGTGTTTTAGCGAGGAGGTTGGAGATGAGGCGATCCTCAATGACTATCTAGTCCGGGCTTCTTTAGGATGGGAGTGACTGCAGCTGTTTTGTACATGGACGGGACAGCTCCATGGGCGAGGGAGAGGTTGATGGTGTGGACagagagcaggcaggcaggctttgATGAGAGGATCCTGAGAGCAGGTTGTCGTCCTGGGTGACATGTCAAGTTGAGAGATATAGGGGGCTGAATGTGGAGAGTCGGGTTTCAGGGGTAACAGTTGCGGCAGATTTATCGCTCGGTGATTAAACTAATCTTgtccttgaaaaaaaaaaaactgaaggaGTTGCAGAGTTCAGTCAAGAGAGTAGATAAGGTGTGGTCACGGGGCTGAAGTAGTTTCTTGACAGTGGGGAATAAGAGTCTGGGGGTTCTTATTGGAGCTGTTGAAGTAGATGGACCTGGCAGCAGAGGCCATCTCTGTAGGTGGAGTTTGAGCCCAGACTTCCTGCTCAGGCTCCAGCCAGCTTGTTTCAGAGCACAAAGTTCATGGGCAAACCAGGGATGAGGAGGATGAGACGGGTTCAGTTTGGAGAGAGGCCAGAGAGTTGAGGGGGACATGTATAGAGCAGTGTTTAATTGGGCTGCATGACTGGCGCACATTCTACAACTCATTCTTTACAGACTCTCAATGAGCACACAGGAGCCTTATCAGTAATGGTAGATCTGCGGAGAATAAAAAAAATTACCCAAAATTCCATTCACAGAAGAAGTGTGGGACATTCTAAAATGCTTGTTCTCCCAACGATGGCTTAATGTGACTTAAGGACATAAAATCAacatgtgggtgggtgggtgggtggggtccaggggcaatgttaacatgtgtaaAATGACAAGTATTGATACATATTTGAATTCAATCTATTAAAGATGATATGGAACTGTTG
>XM_036955253.1
TGTAGTTTGAAACACGCCTAGTCAGTCGAAAAAGAAAAATGCGCATATTGCCATCGCTTTTGTGTGCGATCCCTTTGGAATAGATATCCACGCGTAAATAACAATTTATTCGTTAAACAATAAACACTTGATTCAAAAtaatcattttttatttgattttattgcGTTTGAGCGAAGCAAGGCCTCAGGACAGCGAGGATAACCAGCCTGCCgctctccttccacactgagcCCAAGCCTATACTgactgggtcctgattgtgacaaAGAAGTTCCCTGGGCACCGCAGgagagatggcatcagtgaaaGAAAGCAGTCAAACTCTCCGGCTGAATATCATCACAAAAGATATAGAAGAGGAAGTGAAGATTTGGGAATGCGATGATTACGcagAAGAGAGTCCAGAGATGGCGTCAGTGAAGTTGGCAGACAGCAGTCAAACACTTGGGCTGAATGTCACCTttaaagaagaggagaagggtGACTTTGGGGAATCTGATCATGGAGAGACCCCTAACTCCTCTGACCAAGTTGAGACATTTCCTGCTCCAGTCAAGCATCGTCGGAAAGTGAGTAAAGTGAAGAGGTCTCACCACTGTCCCCACTGTGAGAAGATTTTCCCTTTCCTTTCATATCTTGAAAGACACGTGCGAAAACATtccggagagaagccttactcttgctctgactgtgggatgAGTTTCTCTCAACTGAGTGGCTTGAATGtgcaccagcgaacacacactggagagaagcctcacCACTGTCCTCACTGTGAGGAGAGTTTCCCATTCCCATCATATCTTGAAAGACACCTGCGAAAACAttcaggagagaagccttattcctGCTCTGTCTGTGGGATGAGTTTCTCTCAACGCAGTGGCTTGAACGTGCACCAGCGatcacacactggagagaagcctcacCACTGTCCTCACTGTGAGGAGAGTTTCCCATTCCCATCATATCTTGAAAGACATCTGCGTAAACattctggagagaagccttattcctgctctgactgtgggatgAGTTTCTCTCAACTGAGTGGCTTGAATGtgcaccagcgaacacacactggagagaagcctcacCACTGTCCTCAGTGTAAGGAGAGTTTCCCATTCCCATCATATCTTGAAAGACACATGCGAAAACattctggagagaagccttattcctGCTCGGTCTGTGGGATGAGTTTCTCGCAACTGAGTGGCTTGAATGtgcaccagcgaacacacactggagagaagcctcaccgctgtcctcacTGTGAGAAGAGTTTCCCATTCCCATCATATCTTGAAATACACCTGCGGAAACATTCTGGAGAGAAACcgtactcctgctctgactgtgggaaatgcttcacaacatcaagTCATCTAACCTCTCATCGGATaactcacacaggggagaagccttactcttgctctgactgtgggaagagtttcccATTCCCATCATATCTTGAAAGACACCTGCGGAAACATTCTGGCGAGAAGCCGTactgctgctctgactgcggGAAATGCTTCACCACATCAAGCAATCTAACACTTCATCAGAgtgcacacaggggagaagccttactaATGATCTGACGAGTGTGGAAGAATCTCATCTGGACAGCCTGAACCTTCGCAAGTaaaacacacaggagaaaaacctTACTCCTGCTCTAACCGCGGGGAAGGATTTCACCTCACCAAGTCATCTAACCGTTCATAAGAGAGTGCACACAGGAAAAAAAAGCCTTATCAATGTTCTGAATGTGGGTAGCTTCAAACACCACCAGCGAATAAGTACAGGAGAGAAGTCGTACTCTTGTTCTGACTGTGAGAAGTGCTTCACCTCATTGAATCAGTTAGGTGTTCATCATAGCACTATATCTGCTACGTCTTTGCTGATCAATTACATTGTAAAATGACATTGTGCTGCCCTTTTTATAGACCTGTGGAAGTCTTTCGATTGTGTTGACCAATTTTGGCGGCAggtagagagttggactagtaatcgactggttgcaagatcgaatcccccgagctgaccaggtaaaaatctgtcgttctgcccctgaacaaggcagttagcccactgttcctaggccgtcattgaaaataagaatttgttcttaactgacttgcctacttaaataaaaatTGGCCTGGGTCAGGCAACCTGCATTTGGTTTGAAAACAACCTGACCGAGAGGACACTTCTGATGGTGTTAAGTAAAGTTTCCTTTAGTACTAAacggtgccccccccccctcccccccctcccctgggTCGATTTTGGGCCCTGTACTTTTTGCTATCTATATAAACACTATTGGTTTGTAAGAAATTGTAACCTCCACTTGTATGTGGACGATACTGTTGCGCATTCTGTTCACAAGGCTCGTCCAGAACTACAATCTGCCTTATGTTTTGCAGAAAGCCTTTGTTCAACTGGAGTTGGTACTTAATGCAGGTAACCAGGTATGTTATTTTCAAAAACACTTAAGTGTATTTGATGTtttatccatatatatatatatattggatgGTGACAACAATTGATAGTGTCCCTGTttattataataatacatgggACTTATTTTCAATGTCGCTTTTACCATTGTGgaaactaaacagaaaacaagacgACATCAAGACAACGGCAGGAAGAAACAAAACCGTGAGAGGGGCTTAAAGAAGGGAAACGAGTGTGAGGGAGGAGTTCGGCTGCAGAGTTCTGAACCATTTGGAGCTTATGGAGGGAGCTTGCATTGATGCCTGGAGATTAGTGAGTTGCAGTAAGTCGAGACGGGAGATGATAAATGCTTGGATCTGGGTTTCAGCGACAGATGTAGTGGTGGAAAGAGGGTGCAGTCCAGGATAACACCTGGGTTGAGGCAGAGACAATGGTATCATCAATGGTTAGGTTAACAATTTATGGCAACTGGATGTTGAAGTGATGGAGTATCTGGCCAAGGGGGAGGATGTAGATGAAGAGTAAGGGGCCCAGCACAGAGCCCTGAGTGACACCCAATGTGAAACTGCAGCTGTGTGAGGTATGGCCATTGAGTGAGATGTAGTGGGTCTGGTTGGTGAGGTATGATTGTAGCCAGGAGAGTGCCCTCAACACCCAGACCCGCTAGCCTGATGACCAGGACTTGTTGGCTCAACGTGTCAAAGACAAATCAGGATGTTGAGGGCACTGACATCAGCAGAGGTTAGGTCATTGATGACTGACGGGGGCGGAATCCAGACTGGATGGGCTCAAATAGGTTATTGTTCAGGAGGTGGGTTTGTAGTGGAGAGGCAGCTGGCCTTTTCAAGTGTTTTAGCGAGGAGGTTGGAGATGAGGCGATCCTCAATGACTATCTAGTCCGGGCTTCTTTAGGATGGGAGTGACTGCAGCTGTTTTGTACATGGACGGGACAGCTCCATGGGCGAGGGAGAGGTTGATGGTGTGGACagagagcaggcaggcaggctttgATGAGAGGATCCTGAGAGCAGGTTGTCGTCCTGGGTGACATGTCAAGTTGAGAGATATAGGGGGCTGAATGTGGAGAGTCGGGTTTCAGGGGTAACAGTTGCGGCAGATTTATCGCTCGGTGATTAAACTAATCTTgtccttgaaaaaaaaaaaactgaaggaGTTGCAGAGTTCAGTCAAGAGAGTAGATAAGGTGTGGTCACGGGGCTGAAGTAGTTTCTTGACAGTGGGGAATAAGAGTCTGGGGGTTCTTATTGGAGCTGTTGAAGTAGATGGACCTGGCAGCAGAGGCCATCTCTGTAGGTGGAGTTTGAGCCCAGACTTCCTGCTCAGGCTCCAGCCAGCTTGTTTCAGAGCACAAAGTTCATGGGCAAACCAGGGATGAGGAGGATGAGACGGGTTCAGTTTGGAGAGAGGCCAGAGAGTTGAGGGGGACATGTATAGAGCAGTGTTTAATTGGGCTGCATGACTGGCGCACATTCTACAACTCATTCTTTACAGACTCTCAATGAGCACACAGGAGCCTTATCAGTAATGGTAGATCTGCGGAGAATAAAAAAAATTACCCAAAATTCCATTCACAGAAGAAGTGTGGGACATTCTAAAATGCTTGTTCTCCCAACGATGGCTTAATGTGACTTAAGGACATAAAATCAacatgtgggtgggtgggtgggtggggtccaggggcaatgttaacatgtgtaaAATGACAAGTATTGATACATATTTGAATTCAATCTATTAAAGATGATATGGAACTGTTG
>TU1881846
TAGTGTCCCTGTttattataataatacatgggACTTATTTTCAATGTCGCTTTTACCATTGTGgaaactaaacagaaaacaagacgACATCAAGACAACGGCAGGAAGAAACAAAACCGTGAGAGGGGCTTAAAGAAGGGAAACGAGTGTGAGGGAGGAGTTCGGCTGCAGAGTTCTGAACCATTTGGAGCTTATGGAGGGAGCTTGCATTGATGCCTGGAGATTAGTGAGTTGCAGTAAGTCGAGACGGGAGATGATAAATGCTTGGATCTGGGTTTCAGCGACAGATGTAGTGGTGGAAAGAGGGTGCAGTCCAGGATAACACCTGGGTTGAGGCAGAGACAATGGTATCATCAATGGTTAGGTTAACAATTTATGGCAACTGGATGTTGAAGTGATGGAGTATCTGGCCAAGGGGGAGGATGTAGATGAAGAGTAAGGGGCCCAGCACAGAGCCCTGAGTGACACCCAATGTGAAACTGCAGCTGTGTGAGGTATGGCCATTGAGTGAGATGTAGTGGGTCTGGTTGGTGAGGTATGATTGTAGCCAGGAGAGTGCCCTCAACACCCAGACCCGCTAGCCTGATGACCAGGACTTGTTGGCTCAACGTGTCAAAGACAAATCAGGATGTTGAGGGCACTGACATCAGCAGAGGTTAGGTCATTGATGACTGACGGGGGCGGAATCCAGACTGGATGGGCTCAAATAGGTTATTGTTCAGGAGGTGGGTTTGTAGTGGAGAGGCAGCTGGCCTTTTCAAGTGTTTTAGCGAGGAGGTTGGAGATGAGGCGATCCTCAATGACTATCTAGTCCGGGCTTCTTTAGGATGGGAGTGACTGCAGCTGTTTTGTACATGGACGGGACAGCTCCATGGGCGAGGGAGAGGTTGATGGTGTGGACagagagcaggcaggcaggctttgATGAGAGGATCCTGAGAGCAGGTTGTCGTCCTGGGTGACATGTCAAGTTGAGAGATATAGGGGGCTGAATGTGGAGAGTCGGGTTTCAGGGGTAACAGTTGCGGCAGATTTATCGCTCGGTGATTAAACTAATCTTgtccttgaaaaaaaaaaaactgaaggaGTTGCAGAGTTCAGTCAAGAGAGTAGATAAGGTGTGGTCACGGGGCTGAAGTAGTTTCTTGACAGTGGGGAATAAGAGTCTGGGGGTTCTTATTGGAGCTGTTGAAGTAGATGGACCTGGCAGCAGAGGCCATCTCTGTAGGTGGAGTTTGAGCCCAGACTTCCTGCTCAGGCTCCAGCCAGCTTGTTTCAGAGCACAAAGTTCATGGGCAAACCAGGGATGAGGAGGATGAGACGGGTTCAGTTTGGAGAGAGGCCAGAGAGTTGAGGGGGACATGTATAGAGCAGTGTTTAATTGGGCTGCATGACTGGCGCACATTCTACAACTCATTCTTTACAGACTCTCAATGAGCACACAGGAGCCTTATCAGTAATGGTAGATCTGCGGAGAATAAAAAAAATTACCCAAAATTCCATTCACAGAAGAAGTGTGGGACATTCTAAAATGCTTGTTCTCCCAACGATGGCTTAATGTGACTTAAGG

Function

NR:

description
putative RNA-directed DNA polymerase from transposon X-element

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955252.1 False 4298 mRNA 0.46 4 59996525 60022616
XM_036955253.1 False 4263 mRNA 0.46 4 59996535 60022616
TU1881846 True 1570 lncRNA 0.48 1 60020925 60022494

Neighbor

gene id symbol gene type direction distance location
LOC110510484 LOC106607199 coding upstream 34808 59865592 ~ 59961717 (+)
ankef1b LOC106609265 coding upstream 156669 59814601 ~ 59839856 (+)
LOC110498234 LOC106607246 coding upstream 196938 59773968 ~ 59799587 (+)
LOC110498214 LOC106607310 coding upstream 235810 59739558 ~ 59760715 (+)
rdh14a LOC106607934 coding upstream 508131 59482942 ~ 59488394 (+)
LOC110498212 rp1l1 coding downstream 288843 60311459 ~ 60330337 (+)
fndc4b LOC106604723 coding downstream 335432 60358048 ~ 60375297 (+)
LOC110498402 LOC106604468 coding downstream 360367 60382983 ~ 60392450 (+)
plaat1l LOC106611413 coding downstream 376244 60398860 ~ 60402461 (+)
LOC118941500 NA coding downstream 379843 60402459 ~ 60405097 (+)
G1645016 NA non-coding upstream 36718 59958283 ~ 59959807 (+)
G1645013 NA non-coding upstream 40600 59955611 ~ 59955925 (+)
G1644968 NA non-coding upstream 132019 59864215 ~ 59864506 (+)
G1644961 NA non-coding upstream 138875 59857330 ~ 59857650 (+)
G1644960 NA non-coding upstream 140871 59855202 ~ 59855654 (+)
G1645042 NA non-coding downstream 1316 60023932 ~ 60024286 (+)
G1645044 NA non-coding downstream 3267 60025883 ~ 60026242 (+)
G1645045 NA non-coding downstream 3721 60026337 ~ 60026829 (+)
G1645046 NA non-coding downstream 4273 60026889 ~ 60027106 (+)
G1645050 NA non-coding downstream 7152 60029768 ~ 60030006 (+)
G1644651 NA other upstream 248180 59747984 ~ 59748345 (+)
G1644569 NA other upstream 387131 59608600 ~ 59609394 (+)
G1644280 NA other upstream 799512 59196684 ~ 59197013 (+)
G1644123 NA other upstream 939302 59054523 ~ 59057223 (+)
LOC110498189 klhdc1 other upstream 1698290 58293310 ~ 58298259 (+)
chrna2a LOC103467111 other downstream 450507 60462967 ~ 60475546 (+)
LOC110498236 LOC106603790 other downstream 519420 60541955 ~ 60546243 (+)
G1645443 NA other downstream 693317 60715933 ~ 60718611 (+)
G1645034 NA non-coding upstream 17257 60001944 ~ 60003668 (+)

Expression


Co-expression Network