LOC110498236 (LOC106603790)


Basic Information

Item Value
gene id LOC110498236
gene name LOC106603790
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 60541955 ~ 60546243 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955268.1
TCTATCAGTTAGCTGGCCAAGTAGTCTGTCGCTATGCGCAATGGTTCCAAAGGTCCCTTTCCAACATTCCACCTGCTTCACAGCCAATAGACGGGAACGCGTCCTGGTGAGCTGGACTACAGAAAGAACATGCCGCGACGGACACGTCAAAACAAAAAGCCATCCAAGTCTGCATCAGAAGACCTGACAAGAATAATAGAAAATGTCGAGTTTCAGTCGGATgatgtggagggggagagagagggcgggagagtaaagagagaggggaggcagtgGGAGACAGAACCAGGGACAAGAGGCACTGCGATGAGTGAGTGTGAGCGCGTTAGCCTGGTAAAACAGAACGGTCCTACTCTGAAGACGTCCAAACAAGTTCACATCGTCTTCCTCCCCGACAGATACCAAACTCTCATAGAGGTGGAGGACagcgagggaagagaggaggaggagaggaaaaaagaGGCGAAGGAGAAGAGAAAAAAGGAGAAACACAAGAAGTACAGAAAGAACGTCGGGAAGGCTCTGCGGTTCGGCTGGCGATGTCTGGTTGCCGGGTTACAGAGCTTAGCGAGTGGCTATGCTACACCCCTTTCGGCTGCAGCCACGTTGGTGACCGACGTCCACAGAACTCACCGCTAGGCATGATGGGACGGAGGACTAATATCTGGGACTAGACACATACAGTCTCAACTGCATTTTATGTCATTATTTGAGACTCCTTAACCGTTACCTAATACAGTATGTGATTCTAGTGGTTAAATCAGGTTGGTTATGTAATGTTACCTTCTCCTGTTTCGTTTTACTCTGCTAGCATTGTCACATTTGAATAATATTTTTATGTTTCACGTTGAATGTTTTGATGTTTATCCGTCTTTGTTTTGATGTTTACTGGTCTTTGTTTTGATGTTTACTGGTCTTTGTTTTGATGTTTACTGGTCTTTGTTTTGATGTTTTCTATCTGAAAAGGAAGTAAAGAGAGTGCCGAGGAAGAAAGAGTAGGAATGAGAAAGTACAGCACGGTAAAATATAAAGAGGATGGAAACAGAAATGGATATAGATTTGAAAAGAGGAAAAAGTATGACGGGAGACGGTTTGAGATGCGGAGATGAGTTGACATAAAGTGTTTTTCTCCGAAGCAAAGTAAACACTTCTACAGTATGCACCAGACAATACTACGCACTTTAACTGGTTTACCTGCTCGATTGAGAAAGGATCGTGACCAGGGAAATGAACCAAAATGCCTGTCCAGGTCCTACCATTCCCACCGTGGTACTAACCAGGGGTGTATCCAGCAGGTCGCAACGTTTTTTGGAGTGCTCAGAACGAACCGTGTTGCTCTAACATGCCTCAGATAGGGAGGGCTGTAACGTAGACGCttggagtcaggaagcaggttgGAGAGTTTAAATAAAATGCAAACAATAAACCAACACAACACCAAGAGTAGCGTCGGGACATGGAAACAGAGTCAGTAACGCCTGATGGGAAATATAAGGCTTAAAATACA
>TU1882215
AGCCAATAGACGGGAACGCGTCCTGGTGAGCTGGACTACAGAAAGAACATGCCGCGACGGACACGTCAAAACAAAAAGCCATCCAAGTCTGCATCAGAAGACCTGACAAGAATAATAGAAAATGTCGAGTTTCAGTCGGATgatgtggagggggagagagagggcgggagagtaaagagagaggggaggcagtgGGAGACAGAACCAGGGACAAGAGGCACTGCGATGAGTGAGTGTGAGCGCGTTAGCCTGGTAAAACAGAACGGTCCTACTCTGAAGACGTCCAAACAAGTTCACATCGTCTTCCTCCCCGACAGATACCAAACTCTCATAGAGGTGGAGGACagcgagggaagagaggaggaggagaggaaaaaagaGGCGAAGGAGAAGAGAAAAAAGGAGAAACACAAGAAGTACAGAAAGAACGTCGGGAAGGCTCTGCGGTTCGGCTGGCGATGTCTGGTTGCCGGGTTACAGAGCTTAGCGAGTGGCTATGCTACACCCCTTTCGGCTGCAGCCACGTTGGTGACCGACGTCCACAGAACTCACCGCTAGGCATGATGGGACGGAGGACTAATATCTGGGACTAGACACATACAGTCTCAACTGCATTTTATGTCATTATTTGAGACTCCTTAACCGTTACCTAATACAGTATGTGATTCTAGTGGTTAAATCAGGTTGGTTATGTAATGTTACCTTCTCCTGTTTCGTTTTACTCTGCTAGCATTGTCACATTTGAATAATATTTTTATGTTTCACGTTGAATGTTTTGATGTTTATCCGTCTTTGTTTTGATGTTTACTGGTCTTTGTTTTGATGTTTACTGGTCTTTGTTTTGATGTTTACTGGTCTTTGTTTTGATGTTTTCTATCTGAAAAGGAAGTAAAGAGAGTGCCGAGGAAGAAAGAGTAGGAATGAGAAAGTACAGCACGGTAAAATATAAAGAGGATGGAAACAGAAATGGATATAGATTTGAAAAGAGGAAAAAGTATGACGGGAGACGGTTTGAGATGCGGAGATGAGTTGACATAAAGTGTTTTTCTCCGAAGCAAAGTAAACACTTCTACAGTATGCACCAGACAATACTACGCACTTTAACTGGTTTACCTGCTCGATTGAGAAAGGATCGTGACCAGGGAAATGAACCAAAATGCCTGTCCAGGTCCTACCATTCCCACCGTGGTACTAACCAGGGGTGTATCCAGCAGGTCGCAACGTTTTTTGGAGTGCTCAGAACGAACCGTGTTGCTCTAACATGCCTCAGATAGGGAGGGCTGTAACGTAGACGCttggagtcaggaagcaggttgGAGAGTTTAAATAAAATGCAAACAATAAACCAACACAACACCAAGAGTAGCGTCGGGACATGGAAACAGAGTCAGTAACGCCTGATGGGAAATATAAGGCTTAAAATACAGTAAAATGTAGCTCTGTCACATGATTTAAAATACAGTCAAATGTAGCTCTGTCACATGatttaaaatacagtaaaatGTAGCTCTGTCACATGatttaaaatacagtaaaatGTAGCTCTGTCACATGatttaaaatacagtaaaatGTAGCTCTGTCACATGatttaaaatacagtaaaatGTACCTCTGTCACATGatttaaaatacagtaaaatGTTGCTCTGTCACATGatttaaaatacagtaaaatGTACCTCTGTCACATAATTTAAAATACAGTCAAATGTAGCTCTGTCACATGatttaaaatacagtaaaatGTTGCTCTGTCACATGatttaaaatacagtaaaatGTTGCTCTGTCACATGatttaaaatacagtaaaatGTTGCTCTGTCACATGatttaaaatacagtaaaatGTACCTCTGTCACATGatttaaaatacagtaaaatGTTGCTATTTTACAAGTGCTACATATATGGGGAGTAATCAGGAAGGTGACAGAGTCCAGGTGTGCCTGATGATGATGTGCAGGTGTGCCTGATGATGatgtgcaggtgtgtgtaatgatgatgtgcaggtgtgtgtaatgatgatgtgcaggtgtgtgtaatgatgatgtgcaggtgtgtgtaatgatgatgtgcaggtgtgtgtaatgatgatgtgCAGgtgtgtgtaatgatgatgtgcaggtgtgtgtaatgctgatgtgcaggtgtgtgtaatgatgatgtgcaggtgtgtgtaatgatgatgtgcaggtgtgtgtaatgatgggtagGCCTGGCGGTGGTTAGTAAACCGGAGGAGAAGAGCAGGGGACCAGGGGTAGACGTGACAATGGCACTGTGTTTGGCACAATCATGTGACAGAACAACATTTTATCCTGTATTTTAAATCATGTGACAGAGCAATATTTGATCCTGTATTTTAAATCATGTGACAGAGCAATATTTGATCCTGTATTTTAAATCATGTGACAGAGCAATATTTGATCCTGTATTTTAAATCATGTGACAGAGCAATATTTGATCCTGTATTTTAAATCATGTGACAGAGCAATATTTGATCCTGTATTTTAAATCATGTGACAGAGCAATATTTGATCATGTATTATAAAACTTGTAAAAGAGCAATATTTGATCCTGTATTTTAAATCATGTGACAGAGCTACattttactgtattttaaatTGT

Function

NR:

description
uncharacterized protein C1orf115 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955268.1 False 1507 mRNA 0.45 2 60541955 60544941
TU1882215 True 2635 TUCP 0.40 4 60542036 60546243

Neighbor

gene id symbol gene type direction distance location
chrna2a LOC103467111 coding upstream 66409 60462967 ~ 60475546 (+)
LOC118941500 NA coding upstream 136858 60402459 ~ 60405097 (+)
plaat1l LOC106611413 coding upstream 139494 60398860 ~ 60402461 (+)
LOC110498402 LOC106604468 coding upstream 149505 60382983 ~ 60392450 (+)
fndc4b LOC106604723 coding upstream 166658 60358048 ~ 60375297 (+)
LOC110498226 LOC106603826 coding downstream 11795 60556736 ~ 60569739 (+)
LOC100136771 pomc coding downstream 235000 60779941 ~ 60782510 (+)
LOC110498232 LOC106605409 coding downstream 304902 60849843 ~ 60866965 (+)
xdh xdh coding downstream 343423 60888364 ~ 60937197 (+)
LOC110498404 LOC105025554 coding downstream 697481 61242422 ~ 61308910 (+)
G1645380 NA non-coding upstream 1440 60540281 ~ 60540515 (+)
G1645379 NA non-coding upstream 1732 60540012 ~ 60540223 (+)
G1645316 LOC106603693 non-coding upstream 7626 60477968 ~ 60534329 (+)
G1645373 NA non-coding upstream 29008 60511228 ~ 60512947 (+)
G1645371 NA non-coding upstream 38033 60500256 ~ 60503922 (+)
G1645318 NA non-coding downstream 4254 60549195 ~ 60550121 (+)
G1645409 NA non-coding downstream 105616 60650557 ~ 60705313 (+)
G1645415 NA non-coding downstream 112783 60657724 ~ 60715105 (+)
G1645464 NA non-coding downstream 214429 60759370 ~ 60759890 (+)
G1645480 NA non-coding downstream 238873 60783814 ~ 60788604 (+)
G1644651 NA other upstream 793610 59747984 ~ 59748345 (+)
G1644569 NA other upstream 932561 59608600 ~ 59609394 (+)
G1645443 NA other downstream 170992 60715933 ~ 60718611 (+)
G1645444 NA other downstream 173817 60718758 ~ 60738957 (+)
G1646089 NA other downstream 657417 61200860 ~ 61203352 (+)
G1646225 NA other downstream 799846 61344787 ~ 61345154 (+)

Expression


Co-expression Network