cfd (LOC101448046)


Basic Information

Item Value
gene id cfd
gene name LOC101448046
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 66718434 ~ 66723596 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593675.1
TGCGCCAACTTGGCTGATTTATATATTTCCTCCCTTTCTGCGTTCAGAATAATACTGTGTGTTCTCTGCTCTGAGAGACACTGTAACCAAACAGACTGACACAATGGGCTGTGAGAGACGGCTGTTCCTGACTGCTGCTCTGCTGGCTGTCTTTTTATGCAGTGATGCTATCACCGGTGGACGAGAGGCGGAGGCCCACTCCCGTCCATACATGGCCTCACTGCAGGTCGCCGACGGAGGCAGGATGAAACATGAGTGCGGAGGGTTTCTGGTGGCCGATCAGTGGGTGATGAGCGCCGCACACTGCTTCCTCTCTGGGTCAGAAGGGAGGAAGGTGGTCCTAGGAGCTCACTCTCTGAGCGAACCGGAGGATTCTAAACAAACCTTTGACATTGTTCAAGTGTTCAGTCACCCTGATTTCAGCATCTCTAACTATGATAATGACATTGCTTTGGTCAAGCTGGACCGGCCAATCATTGCCAGTGATGCAGTAAAGTCCCTGAAGTTCCAGAGTGACGATGGGGCTGACCCCGCCACGGAACAGGAGGTCAACACGGCGGGGTGGGGGTCACTGAACAACCTGGGGTCGCGTCCTGACAAGCTACAGGAACTGGTCATCGCTGTGATGAACCGTGTTCGATGCGGCCGCAGTGACTACTATGGCAGGAAGTTCACCAAAAACATGCTGTGTGCGGCCAGCAAACAGAGTGACACCTGTGATGGTGATTCTGGAGGTCCTCTCCTGTATAATGGTGTAGCAGTTGGGATCACTTCAAATGGAGGGAAGAAGTGTGGATCCAGCAAGAAGCCTGGTTTATACACCACCATCTCCCACTACAGCCAGTGGATAGACAAGACCATGACTCAATAGAAGCCTGGTTTATACACCCCCATCTCCCACTACAGCCAGTGGATAGACAAGACCATGACTCAATATAAGCCTGGTTTATACACCCCCATCTCCCACTACAGCCAGTGGATAGA

Function

NR:

description
complement factor D-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K01334 CFD; complement factor D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593675.1 True 984 mRNA 0.52 5 66718434 66723596

Neighbor

gene id symbol gene type direction distance location
LOC110498313 LOC106611434 coding upstream 339260 66370807 ~ 66379174 (+)
LOC110498312 LOC106560777 coding upstream 371433 66345732 ~ 66347001 (+)
LOC110498653 atrn coding upstream 910059 65549526 ~ 65812816 (+)
LOC110498317 LOC106600683 coding upstream 1191476 65515808 ~ 65526958 (+)
LOC110498315 LOC106606645 coding upstream 1427343 65250079 ~ 65291091 (+)
LOC110498318 LOC106560213 coding downstream 219117 66942713 ~ 66975247 (+)
LOC110498319 pgrmc2 coding downstream 263235 66986831 ~ 66995509 (+)
jade1 jade1 coding downstream 277739 67001335 ~ 67087574 (+)
G1650205 NA non-coding upstream 27963 66676088 ~ 66690471 (+)
G1650191 NA non-coding upstream 41700 66621943 ~ 66676734 (+)
G1650203 NA non-coding upstream 46334 66666493 ~ 66672100 (+)
G1650183 NA non-coding upstream 111316 66602758 ~ 66607118 (+)
G1650184 NA non-coding upstream 111843 66605340 ~ 66606591 (+)
G1650236 NA non-coding downstream 12849 66736445 ~ 66741939 (+)
G1650241 NA non-coding downstream 22193 66745789 ~ 66746880 (+)
G1650249 NA non-coding downstream 35099 66758695 ~ 66763420 (+)
G1650373 NA non-coding downstream 73629 66797225 ~ 66797824 (+)
G1650395 NA non-coding downstream 93116 66816712 ~ 66817038 (+)
G1649614 NA other upstream 742194 65970505 ~ 65976240 (+)
G1649319 NA other upstream 1116018 65600960 ~ 65602416 (+)
G1649309 NA other upstream 1135852 65578439 ~ 65582582 (+)
G1649291 NA other upstream 1173379 65544377 ~ 65545055 (+)

Expression


Co-expression Network