LOC110498319 (pgrmc2)


Basic Information

Item Value
gene id LOC110498319
gene name pgrmc2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 66986831 ~ 66995509 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574953.2
ACAGGGCCAATCATATCTGACGAGGAGCCCCAGGTGGGCGGGTCTTTGTGGTAGGCGCTGTCGACAATATGGCGGATGACGGAGACAGGTCGACTGGAGCTGTTGATACTAGTGGCGGACCGGGGACTTCAGAGGAGTCTGACGGGTTCAGTCTTGGCGGGATGTTGTTAAATTTAAGTATTTTAGTTGTAGTGGTTACGATCTGCTATGTTATTTATCGGCGATGGGGTAAACGGATTGGTGCTGACGCGGCCCAGGGAAGCGAGGCCTCGTCTCTGCCGAAGATGAGAAGACGTGATTTCACTTTGGAGCAACTTGGGGAATACGATGGACTGCAAAACCCCCGGATCATGATGGCAGTCAATATGAAAGTATTCGATGTTACCACCGGCAAAACGTTTTATGGCCGAGacGGTCCTTATGGTATCTTTGCGGGCCGGGATGCATCGAGGGGTCTGGCCACGTTCTGTTTGGAGAAAGATGCCTTGAGGGAGGAATATGATGACCTGTCAGACCTCAACGCTGTTCAGATGGAGTCAgtcagagagtgggagaggcagtTCATGGAAAAATATGATTATGTTGGTCGACTGTTAAAGCCCGGGGATGAGCCGTCAGAATACACAGATGAGGAGGACATCAAGGACCACCTGAAACATGACTGAACTGTTGCCCTGTTCTGTTCACACCACCAACCAAAGCCTTGACCCAAACAGCTGACAGCACCTGTCCCCCCCAcacccttcctcttccctctcaagcccccccccctcctcttcttccctctcaagccccccctcctcctcttcttccctctcaacccccctccttcttcttcttcttccctctcaagc

Function

symbol description
pgrmc2 Acts upstream of or within oocyte maturation and ovulation. Predicted to be integral component of membrane. Predicted to be active in endomembrane system and membrane. Is expressed in several structures, including digestive system; gonad; heart; integument; and muscle. Orthologous to human PGRMC2 (progesterone receptor membrane component 2).

NR:

description
membrane-associated progesterone receptor component 2-like

GO:

id name namespace
GO:0020037 heme binding molecular_function

KEGG:

id description
K17278 PGRMC1_2; membrane-associated progesterone receptor component

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574953.2 True 854 mRNA 0.53 3 66986831 66995509

Neighbor

gene id symbol gene type direction distance location
LOC110498318 LOC106560213 coding upstream 11584 66942713 ~ 66975247 (+)
cfd LOC101448046 coding upstream 263235 66718434 ~ 66723596 (+)
LOC110498313 LOC106611434 coding upstream 607657 66370807 ~ 66379174 (+)
LOC110498312 LOC106560777 coding upstream 639830 66345732 ~ 66347001 (+)
LOC110498653 atrn coding upstream 1178456 65549526 ~ 65812816 (+)
jade1 jade1 coding downstream 5826 67001335 ~ 67087574 (+)
G1650524 NA non-coding upstream 3405 66983201 ~ 66983426 (+)
G1650522 NA non-coding upstream 6638 66979988 ~ 66980193 (+)
G1650494 yo84 non-coding upstream 19176 66949541 ~ 66967655 (+)
G1650475 NA non-coding upstream 66190 66920376 ~ 66920641 (+)
G1650473 NA non-coding upstream 71519 66915081 ~ 66915312 (+)
G1650511 NA non-coding downstream 74598 67070107 ~ 67114459 (+)
G1650543 NA non-coding downstream 81782 67077291 ~ 67077518 (+)
G1650705 NA non-coding downstream 190261 67185770 ~ 67186227 (+)
G1649614 NA other upstream 1010591 65970505 ~ 65976240 (+)
G1649319 NA other upstream 1384415 65600960 ~ 65602416 (+)
G1649309 NA other upstream 1404249 65578439 ~ 65582582 (+)
G1649291 NA other upstream 1441776 65544377 ~ 65545055 (+)

Expression


Co-expression Network