RNA id: XM_021574953.2


Basic Information

Item Value
RNA id XM_021574953.2
length 854
RNA type mRNA
GC content 0.53
exon number 3
gene id LOC110498319
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 66986831 ~ 66995509 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGGGCCAATCATATCTGACGAGGAGCCCCAGGTGGGCGGGTCTTTGTGGTAGGCGCTGTCGACAATATGGCGGATGACGGAGACAGGTCGACTGGAGCTGTTGATACTAGTGGCGGACCGGGGACTTCAGAGGAGTCTGACGGGTTCAGTCTTGGCGGGATGTTGTTAAATTTAAGTATTTTAGTTGTAGTGGTTACGATCTGCTATGTTATTTATCGGCGATGGGGTAAACGGATTGGTGCTGACGCGGCCCAGGGAAGCGAGGCCTCGTCTCTGCCGAAGATGAGAAGACGTGATTTCACTTTGGAGCAACTTGGGGAATACGATGGACTGCAAAACCCCCGGATCATGATGGCAGTCAATATGAAAGTATTCGATGTTACCACCGGCAAAACGTTTTATGGCCGAGacGGTCCTTATGGTATCTTTGCGGGCCGGGATGCATCGAGGGGTCTGGCCACGTTCTGTTTGGAGAAAGATGCCTTGAGGGAGGAATATGATGACCTGTCAGACCTCAACGCTGTTCAGATGGAGTCAgtcagagagtgggagaggcagtTCATGGAAAAATATGATTATGTTGGTCGACTGTTAAAGCCCGGGGATGAGCCGTCAGAATACACAGATGAGGAGGACATCAAGGACCACCTGAAACATGACTGAACTGTTGCCCTGTTCTGTTCACACCACCAACCAAAGCCTTGACCCAAACAGCTGACAGCACCTGTCCCCCCCAcacccttcctcttccctctcaagcccccccccctcctcttcttccctctcaagccccccctcctcctcttcttccctctcaacccccctccttcttcttcttcttccctctcaagc

Function

GO:

id name namespace
GO:0020037 heme binding molecular_function

KEGG:

id description
K17278 PGRMC1_2; membrane-associated progesterone receptor component

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1889295 lncRNA upstream 3405 66983201 ~ 66983426 (+) True G1650524
TU1889293 lncRNA upstream 6638 66979988 ~ 66980193 (+) True G1650522
TU1889258 lncRNA upstream 19176 66949541 ~ 66967655 (+) True G1650494
TU1889238 lncRNA upstream 66190 66920376 ~ 66920641 (+) True G1650475
TU1889236 lncRNA upstream 71519 66915081 ~ 66915312 (+) True G1650473
TU1889282 lncRNA downstream 74598 67070107 ~ 67114459 (+) True G1650511
TU1889315 lncRNA downstream 81782 67077291 ~ 67077518 (+) True G1650543
TU1889497 lncRNA downstream 190261 67185770 ~ 67186227 (+) True G1650705
XM_036955440.1 mRNA upstream 11584 66942713 ~ 66975247 (+) False LOC110498318
XM_036955441.1 mRNA upstream 11584 66942713 ~ 66975247 (+) False LOC110498318
XM_036955442.1 mRNA upstream 11584 66942713 ~ 66975247 (+) True LOC110498318
XM_021593675.1 mRNA upstream 263235 66718434 ~ 66723596 (+) True cfd
XM_036955436.1 mRNA upstream 607657 66371026 ~ 66379174 (+) False LOC110498313
XM_036955450.1 mRNA downstream 5826 67001335 ~ 67087574 (+) False jade1
XM_036955453.1 mRNA downstream 5827 67001336 ~ 67087574 (+) False jade1
XM_036955447.1 mRNA downstream 5828 67001337 ~ 67087574 (+) False jade1
XM_036955448.1 mRNA downstream 5828 67001337 ~ 67087574 (+) False jade1
XM_036955449.1 mRNA downstream 5828 67001337 ~ 67087574 (+) False jade1
TU1888162 other upstream 1010591 65971455 ~ 65976240 (+) True G1649614
TU1887742 other upstream 1174015 65734614 ~ 65812816 (+) False LOC110498653
TU1887771 other upstream 1384415 65600960 ~ 65602416 (+) True G1649319
TU1887755 other upstream 1404249 65578439 ~ 65582582 (+) True G1649309
TU1887728 other upstream 1441776 65544377 ~ 65545055 (+) True G1649291

Expression Profile