RNA id: TU1887742


Basic Information

Item Value
RNA id TU1887742
length 6567
RNA type TUCP
GC content 0.46
exon number 9
gene id LOC110498653
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 65549526 ~ 65812816 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aGCAGAATCGTGATCTGGTTGTTTTCATTAACGCCTCCAAAAACTTCAACCTCAACATCACCTGGGCTGCCAGCttcacagGTACTCAGACAGGCGAGGTGATCCCAATCATCTCCAGGAGTAACATTAAGGAGTTTAAAGACAGTTTCTCCAATGAGAACTTTGACTTCCGCAACAACCCAAACATCACCTTCTTCGTCTATGTCAGCAACTTCACCTGGCCCATCAAGATACAAattGCCTTCTCTCAGCACAGTAACTTCATGGATCTGGTGCAGTTCTTCGTCACATTCTTCAGctgcttcctttctctcctcctggtGGCGGCAGTCGTCTGGAAGATCAAACAGAGCTGCTGGGCGTCACGGCGACGAGAGCAACTCCTCCGTGAGATGCAGCAGATGGCTAGCCGGCCGTTCGCCACCATCAATGTTGCCTTGGAAATGGACGAGGAGCCGCCGGACCTAATTGGTGGAAACGTCAAGACGGTGCCCAAGCCCATCGCCATGGAGCCGTGTTTTGGGAACAAGGCTGCTGTCCTCTCCATCTTCGTCCGTTTACCCAGAGGCACCGGGGGCATCCCCCCACCCGGTCTAACGGTGGCCTCGGCCCTGGTGGATGTGTCTCAGCAGATGTGTCTTGGTTACAAGGAGAAGTCATGTGGTCTGAGGAACAGGAAGCAACACCCCTCTGCACAGCCCTCCACCTGTATCTGACCACACCCCCTCCCTGCCCCTGGACCCCGCCCTGCTCCATCCTAACCCCTCCCCCTGCCCCAGAGACTACACCCccggactggagggagggatgaagagagagagaggcagggcgtTTCCTGGGGGGAGCTGCATAcctgctgagaggaggaggggagcggGTATGCAGCGGACACCTGCTGCACCTGGGGAACCACACCTGGCTGACAGACATGTGGAACTTAGGGGAAAGAAAAAAAGACTTGTATTAGTCCTCTACCACCTGGTCAGAGTAAAGGAGAAGCTTGATCGCTGTCTACTGTCTGATCAACTACCAGTCATTCTGCTTGGTCTGTCTGCTAGACTGTCTGGTCAACTACCAGTCATTCTACTTggtatgctgtctgtctgtctgtctgtctgtctgctagactGTCTGATCAACTATCAGTCATCCTACTTggtatgttgtctgtctgtctgctagactGTCTGATCAACTATCAGTCATCCTACTTggtatgttgtctgtctgtctgctagactGTCTGATCAACTACCAGTCATCCTACTTggtatgctgtctgtctgtctgctagactGTCTGATCAACTATCAGTCATCCTACTTGgtatgctgtctgtctgtatgtctgtctgattAACTACCAGTCATTCTACTTggtatgctgtctgtctgtctgtctgtctgatcaaCTACCAGTCATCCTACTTGAtatgctgcctgtctgtctgtctgatcaaCTATCAGTCATCCTACTTGGTATGCCGTCTGTCTGCTAAACTACCAGTCATCCTACTTGGTATGCTTTCTACTACCAGATAGTTTGTTTCTACACCTTACCAGTTATATCAGTTAGTCCccagcctgagtgccagtctgtttgtctgtcttgacaatgacagcaatggagttggcaagagcacaaacaaaTGTGGCACTCAGGCTACTTAGTCCCCAGCAGCCTGTTGTTTACTTTAATGTAGCAGTAAGCTAGGTGTTGATAGTAACTGGCTGACTCATTCAGGGCTAATGTAACGTTAGCAGTCTAgtagggctaacgttagcagtcTAGTAGGGCTAATGTTAGCAGTCTAGTAGGGCTAATGTTAGCAGTCTAgtagggctaacgttagcagtcTAGTAGGGCTAACGCTAGCAGTCTAAcagggctaacgttagcagacTAGTAGGGCTAACGCTAGCAGTCTAGTAGGGCTAATGTTAGCAGTCTAGcagggctaacgttagcagtcTAGTAGGGCTAACGCTAGCAGTCTAAcagggctaacgttagcagacTAGTAGGGCTAACGCTAGCAGTCTAGTAGGGCTAATGTTAGCAGTCTAGTAGGGCTAATGTTAGCAGTCTAgtagggctaacgttagcagtcTAGTAGGGCTAACGCTAGCAGTCTAGCAGGGCTAATGTTAGCAGTCTAGTAGGGCTAACGCTAGCAGTCTAGcagggctaacgttagcagtctagtagggctaacgttagcagtctagtagggctaacgttagcagtcTAGTAGGGCTAACGCTAGCAGTCTAAcagggctaacgttagcagactagcagggctaacgttagcagactagcagggctaacgttagcagtcTAGCAGGGCTGACGTTagcatttttttcacctttatttaaccaggtaggccagttcagaacaagttctcatttacaactgcgacctggccaagataaagcaaagcagcccgacacaaacaacaacacagagttacacatggaataaacaaacatacagtcaataacataatagaaaagtctatatacagtgtgtgcaaatgaggtaagattagtgaggtaaggcaataaataggccgtagtggcgaaataattacaatatagcaattaaacactggaatggtagatgtgcagaagatgaatgtgcaagctgatgcttaaagttagtgagggagatatgagtctcgaACTTCATTGATTTTTGCAATTTtttccagtcattagcagcagagaactggaaggaaaggcggtcaaaggAGGAATAGGCTGGATTGTGTACTAcgtgtgggtgctgctatggtgaccagtgagctgagataaagcggggctttacctagcaaagacttagcaaagacttatagatgacctggagccagtgggtttggtgacgaatatgaagcgagggccatccaacgagagtgtacaggtaggtcacagtggtgggtagtatatggggctttggtgacaaaacggatggcactgtgatagactgcatccagtttgctgagtagagtgttggaggctattttgtaaatgacatcgccgaagtcaaggatcagtagtatagtcagttttatgagggtatgtttggcagcgtgagtgaaggatgctttgttgcgaaataggaagccgattctagatttaatgcTGGATAGGAGATGCTTaaagtgagtctggaaggagagtttacagtctaaccagacacctaggtatttgtaattgtccacatattctaagtcagaaccatccagagtagtgatgctggacgggcaagcaggtgcgggcagcgatcggttgaagagcatgcatttagttttacttgcatttaagagcagctgtaggccatggaaggagagttgtatggcattgaagctcgtctggaggttagttaacacagtgtccaacgacgggccagaagtatacagaatggtgtcatctgcgtagaggtggatcaaagaataaCCAGCAGCAAGaccgacatcattgatgtatacagagaatatAGTCGGGCCCAGAATTgcaccctgtggcacccccatagagactgccagaggtccggacaacaggcccgccgatttcacacactgaactctgtcagagaagtagttggtgaaccaggcgaggcaatcatttgagaaaccaaggctgtggaGTCTTCCTataaggatgtggtgattgacaagagtcaaaagccttggccaggtcgatgaagacggctgcacagtattgtcttttatcaatggcggttatgatatcgtttaggaccttgagcgtggctgaggtacacccatgaccagcttggaaaccagattacATAGTGGAGaaagtacggtgggattcgaaatggtcggtgatctggtCGGGACAGTTAGCTAGCAACTTTGTAAGTTGATTTGTAACAATAAATTCATAGTATTTGCTTGTAAGTTGGCTGAAAATTCTATTCAAACCAGTAGTCATGACGATTTGGTTTAATTGTATCCATTTGAAGTTATATTTTGTTGGTGTTTAcgttatagggaataggctggcttGATGGGTCCTCTATATTACATCACACCCGGAAAAAAAAATTCTGACATGACTTGGGCATTGTTGGGAATTCTGATGGGTGTTCTGTCGTAACTCCTGTAATAGAAAAGGGAGGGATATTTGCATTGGGACTTTTGATGAGTAAACTAGTGTAAATCATTAcatgttacattacattacatgtgGTTATGTTTATGCTAACTACCCTTTAAATAGTTAGCAtagtggtggttagagtgttgggccagtaaccgaaaggttcctagatcgaatccccgagctgacaagataaaacatctgtcgttctgcccctgaacaggcagttaacccactgttccatggtaggccgtcattgtaaataagaatgtgttcttaactgacttgcctagttaaataaaggttaaatatatatatattttaaacacttAAATGCAGCAACACATCCAGACAGAGCTGTTGGAGAGAACAGGCATCATGGACTATGTGTCTTACTAGTTTAGAACAGGACCTTATGGCTGTGCTTTATTCAATCCCAGATCTGTTGATGTTGTCTTTGCCAGCTCCCTGTGGTCATTGACAtgccaaacagatctgggaccaggctagtccaTGTTTTCTTCCCCTCTTGTGTTTCCTCTGTTGATGTCCTGACTCACTGACACCCCTGAATACTCCAGCCTCCTCTGTTAGGATGGAAAACCCCAGTCAGATTGTATAGTTTTAACCGGAGCTACCAACCACATCCTTGTAGGTTAAAgccactgggctgtgctggttcATTCCTGTACAGGCGCTGTTTTCCCCTTAATATCCAAAACACACCTCAATAACCCCagctctctgcctcccctcttaGCCTATAAGTCCTCATGGAGGCAGTCAGGCGGTGTAGTTGATAgttgtctccatgtctctctctcctaacagagatatcatgtctctctctcctaacagagatatcatgtctctctctcctaacagAGATATCACGTCTCTCGCTCTCCTAACAgagatctccatctctctctctcctaacagatatatcatgtctctctctcctaacagagatatcatgtctctctctcctaacagagttctccatctctctctctcctaacagagatatcatgtctctctctcctaacagAGATATCACGTCTCTCTCTCCTAACAGATatatcatgtctctctctcctaacagagatctccatctctctctctcctaacagagatctccatctctctctctcctaacagaGATATCACGTCTCTCTCTCCTAACAGAGATATCACGTCTCTCTCTCCTAACAGAgacatcatgtctctctctcctaacagagacatcatgtctctctctcctaacagagatgtcatgtctctctcctaacagagatcatgtctctctctcctaacagagatatcatgtctctctctcctaacagagatctcctgtctcctccagcctcctctcctctgagagcctgtagcctcctctcctctgagagCCTGTAGCCTCCAGTCTCCTGTGAGAGCCTGTAGCCTCCTCTCCTGTGAGAGCCTGTAGCCTCCTCTCCTGTGAGAGCCTGTAGCCTCCAGTCTCCTAAATTGAAGATGCATTTCCCGTCATTTTCGCTCGCATTACTCTTCTCATTGTTTAGAATTCTTCCGCATTTATGCCAAGGATTATGGGATCTTAGAATCCTCTTGTCCTAACCTGGGCATCTTCAACCTAGTATCTAACAACCTCCAACCCACCTGGCTTCTGAAGGACCTTCTGTGCGGCAATACATTGGTAGTGCTTGGGGAGGGATTTGACCCGTGGATTGTGAAGGCAGTGTAaacttcctctcttctcctcccatctTCACAGCAGCAGCAGATCTCCCTCTATACCTCGCTCCGTTAACAGAGATACACAACAACCCTCTAGGAACTGGTCTCAGTTAACAGAGATACACATTAACCCCCTAGGAACTGGTCTCAGTTAATAGAGATACACAACAACCCCCTAGGAACTGGTCTACGTTAACAGAGATACACATCAACCCCCTAGGAACTGGTCTCCGTTAACAGAGATACACATCAACCCCCTAGGAACTGGTCTCAGTTAACAGAGATACACATAAACCCCCTAGGAACTGGTCTACGTTAAGAGATACACAACAACCCCCTAGGAACTGGTCTCCGTTAACAGAGATACACAACAACCCCCTAGGAACTGGTCTCCGTTAACAGAGATACACAACAACCCCCTAGGAACATACATACCCTGGTATCCAACAAAGCCTCAAATTCCTCAGTTTTCTGTtttatctctccctttctcctctctctcttctctcccttcctctctttgtAAATTGGCACTGTAGATACTTGAGGAAGTAGTTTGTTAATATGTATAATTTAGCAGCAatgctgtttgtttttttaaataatgacaAAGTATTGTGAATGATATATTTGTTGATTGGTTTTGAAAATCAAACTCCTGAGGCTCTTAAAGTACAGTAATGTAAGGCGGCACATGATGTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1887745 lncRNA upstream 3492 65729004 ~ 65731122 (+) True G1649300
TU1887822 lncRNA upstream 49026 65683911 ~ 65685588 (+) True G1649366
TU1887815 lncRNA upstream 56692 65676847 ~ 65677922 (+) True G1649362
TU1887779 lncRNA upstream 116044 65617266 ~ 65618570 (+) True G1649326
TU1887774 lncRNA upstream 125386 65607466 ~ 65609228 (+) True G1649321
TU1887880 lncRNA downstream 1748 65814564 ~ 65815201 (+) True G1649418
TU1887882 lncRNA downstream 5208 65818024 ~ 65818342 (+) True G1649420
TU1888161 lncRNA downstream 157689 65970505 ~ 65974606 (+) False G1649614
TU1888165 lncRNA downstream 169187 65982003 ~ 65982307 (+) True G1649616
TU1888181 lncRNA downstream 204308 66017124 ~ 66022164 (+) False G1649630
XM_036955425.1 mRNA upstream 207656 65515808 ~ 65526958 (+) False LOC110498317
XM_036955424.1 mRNA upstream 207657 65515841 ~ 65526957 (+) True LOC110498317
XM_036953841.1 mRNA upstream 443523 65250079 ~ 65291091 (+) False LOC110498315
XR_005037611.1 mRNA upstream 490321 65241682 ~ 65244293 (+) True LOC118941380
XM_036955417.1 mRNA upstream 495177 65230460 ~ 65239437 (+) False nat8
XM_021574945.2 mRNA downstream 532916 66345732 ~ 66347001 (+) True LOC110498312
XM_036955436.1 mRNA downstream 558210 66371026 ~ 66379174 (+) False LOC110498313
XM_021593675.1 mRNA downstream 905618 66718434 ~ 66723596 (+) True cfd
XM_036955440.1 mRNA downstream 1129897 66942713 ~ 66975247 (+) False LOC110498318
XM_036955441.1 mRNA downstream 1129897 66942713 ~ 66975247 (+) False LOC110498318
TU1887771 other upstream 132198 65600960 ~ 65602416 (+) True G1649319
TU1887755 other upstream 152032 65578439 ~ 65582582 (+) True G1649309
TU1887728 other upstream 189559 65544377 ~ 65545055 (+) True G1649291
TU1887705 other upstream 271160 65461773 ~ 65463454 (+) True G1649268
TU1886551 other upstream 753671 64980364 ~ 64980943 (+) False G1648608
TU1888162 other downstream 158639 65971455 ~ 65976240 (+) True G1649614

Expression Profile