RNA id: XM_021574945.2


Basic Information

Item Value
RNA id XM_021574945.2
length 999
RNA type mRNA
GC content 0.53
exon number 3
gene id LOC110498312
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 66345732 ~ 66347001 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGAGAAACAGCCTACGTTGGACATACATTAACTTTGTTTTCCTCGCTTTTCTTTTTTCCATCACGACTGACAGCATGCAAGTACCGAACAGACCAACAGGAGTGGGAGCGTACGGGTACTCCGCCATGCGCCATTACGCTTCGCTCTATCCACAGCGCAACAGTAGCCAGTGCGCAGCGGCGACCAAGCCTGCCAGCGGGAAATCTTTCACCATTGACGCCCTGCTCGCCAAGCCGTCGGAGACACACATAGACCGAACGAGTCCCATTCACTGTAGACTCAAATACCAACCGACAGCGCCACTACATCCTTTCCAGACCCAGATGAGCTCAGCGCTGCCACAGTACCTCTACTCGCCCAACATGCTGCACACGCCGGTGCACAGTCACACACAACCCGGATACTCTGTCTACTGCTGTCCGCCGTTCTCATGCCATGGGGCATTTTACGCACACGAAACAGGTCTATCAATGTCCCACTCATTCAAACACAAGGAAGGGAAATCCAAGCGGATGCGCACCAGCTTCACCAACGAGCAGTTGGACCGTCTGGAGAAGGAGTTCTCCCGGCAGCAGTACATGGTCGGCTCGGAGAGGTTCCTTCTGGCGTCGGGTCTGCAGCTCACAGAGGCTCAGGTTAAAGTGTGGTTCCAGAATCGACGCATCAAATGGCGCAAGCAGAGTCTGGAGCAACAGCAGAACAAGCTGGTTAAACTGGGCCTGGCCACCCCAGTGAAGAGTCCTGGTTCTCAAGGTCTGggggaggaggcggaggagatCGACTTCTCAGACGGATAAGATGTGCATAAAGACGGGCTCCCTGACTACTGCTGACCGGTCTTGGACCACAGAACCGGGCATCTGTATACACCGCTCAAGACACTGAGCCGAGGACCACACCACCCATTACTGTATAAATATTTAATTCATAGATGTATAGTTCTATATTTAAACGATGTTTCTTACTTTATTGCTCTTATGAGAGTGTCTCTGTGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1888531 lncRNA upstream 3006 66342490 ~ 66342726 (+) True G1649895
TU1888523 lncRNA upstream 14233 66330768 ~ 66331499 (+) True G1649888
TU1888503 lncRNA upstream 54991 66289368 ~ 66290741 (+) False G1649874
TU1888504 lncRNA upstream 54991 66289368 ~ 66290741 (+) True G1649874
TU1888501 lncRNA upstream 58385 66286664 ~ 66287347 (+) True G1649873
TU1888534 lncRNA downstream 1061 66348062 ~ 66348269 (+) True G1649897
TU1888540 lncRNA downstream 13757 66360758 ~ 66361005 (+) True G1649903
TU1888549 lncRNA downstream 23806 66370807 ~ 66371040 (+) False LOC110498313
TU1888553 lncRNA downstream 28511 66375512 ~ 66376121 (+) True LOC110498313
TU1888551 lncRNA downstream 33234 66380235 ~ 66380634 (+) True G1649914
XM_036955427.1 mRNA upstream 537357 65549526 ~ 65808375 (+) False LOC110498653
XM_036955429.1 mRNA upstream 537357 65549526 ~ 65808375 (+) False LOC110498653
XM_036955430.1 mRNA upstream 537357 65549526 ~ 65808375 (+) False LOC110498653
XM_036955432.1 mRNA upstream 537357 65549526 ~ 65808375 (+) False LOC110498653
XM_036955426.1 mRNA upstream 537357 65549527 ~ 65808375 (+) False LOC110498653
XM_036955436.1 mRNA downstream 24025 66371026 ~ 66379174 (+) False LOC110498313
XM_021593675.1 mRNA downstream 371433 66718434 ~ 66723596 (+) True cfd
XM_036955440.1 mRNA downstream 595712 66942713 ~ 66975247 (+) False LOC110498318
XM_036955441.1 mRNA downstream 595712 66942713 ~ 66975247 (+) False LOC110498318
XM_036955442.1 mRNA downstream 595712 66942713 ~ 66975247 (+) True LOC110498318
TU1888162 other upstream 369492 65971455 ~ 65976240 (+) True G1649614
TU1887742 other upstream 532916 65734614 ~ 65812816 (+) False LOC110498653
TU1887771 other upstream 743316 65600960 ~ 65602416 (+) True G1649319
TU1887755 other upstream 763150 65578439 ~ 65582582 (+) True G1649309
TU1887728 other upstream 800677 65544377 ~ 65545055 (+) True G1649291

Expression Profile