LOC110498312 (LOC106560777)


Basic Information

Item Value
gene id LOC110498312
gene name LOC106560777
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 66345732 ~ 66347001 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574945.2
CAGGAGAAACAGCCTACGTTGGACATACATTAACTTTGTTTTCCTCGCTTTTCTTTTTTCCATCACGACTGACAGCATGCAAGTACCGAACAGACCAACAGGAGTGGGAGCGTACGGGTACTCCGCCATGCGCCATTACGCTTCGCTCTATCCACAGCGCAACAGTAGCCAGTGCGCAGCGGCGACCAAGCCTGCCAGCGGGAAATCTTTCACCATTGACGCCCTGCTCGCCAAGCCGTCGGAGACACACATAGACCGAACGAGTCCCATTCACTGTAGACTCAAATACCAACCGACAGCGCCACTACATCCTTTCCAGACCCAGATGAGCTCAGCGCTGCCACAGTACCTCTACTCGCCCAACATGCTGCACACGCCGGTGCACAGTCACACACAACCCGGATACTCTGTCTACTGCTGTCCGCCGTTCTCATGCCATGGGGCATTTTACGCACACGAAACAGGTCTATCAATGTCCCACTCATTCAAACACAAGGAAGGGAAATCCAAGCGGATGCGCACCAGCTTCACCAACGAGCAGTTGGACCGTCTGGAGAAGGAGTTCTCCCGGCAGCAGTACATGGTCGGCTCGGAGAGGTTCCTTCTGGCGTCGGGTCTGCAGCTCACAGAGGCTCAGGTTAAAGTGTGGTTCCAGAATCGACGCATCAAATGGCGCAAGCAGAGTCTGGAGCAACAGCAGAACAAGCTGGTTAAACTGGGCCTGGCCACCCCAGTGAAGAGTCCTGGTTCTCAAGGTCTGggggaggaggcggaggagatCGACTTCTCAGACGGATAAGATGTGCATAAAGACGGGCTCCCTGACTACTGCTGACCGGTCTTGGACCACAGAACCGGGCATCTGTATACACCGCTCAAGACACTGAGCCGAGGACCACACCACCCATTACTGTATAAATATTTAATTCATAGATGTATAGTTCTATATTTAAACGATGTTTCTTACTTTATTGCTCTTATGAGAGTGTCTCTGTGAAT

Function

NR:

description
homeobox protein not2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574945.2 True 999 mRNA 0.53 3 66345732 66347001

Neighbor

gene id symbol gene type direction distance location
LOC110498653 atrn coding upstream 537357 65549526 ~ 65812816 (+)
LOC110498317 LOC106600683 coding upstream 818774 65515808 ~ 65526958 (+)
LOC110498315 LOC106606645 coding upstream 1054641 65250079 ~ 65291091 (+)
LOC118941380 NA coding upstream 1101439 65241682 ~ 65244293 (+)
nat8 LOC106607815 coding upstream 1106295 65229684 ~ 65239437 (+)
LOC110498313 LOC106611434 coding downstream 24025 66370807 ~ 66379174 (+)
cfd LOC101448046 coding downstream 371433 66718434 ~ 66723596 (+)
LOC110498318 LOC106560213 coding downstream 595712 66942713 ~ 66975247 (+)
LOC110498319 pgrmc2 coding downstream 639830 66986831 ~ 66995509 (+)
jade1 jade1 coding downstream 654334 67001335 ~ 67087574 (+)
G1649895 NA non-coding upstream 3006 66342490 ~ 66342726 (+)
G1649888 NA non-coding upstream 14233 66330768 ~ 66331499 (+)
G1649874 NA non-coding upstream 54991 66289368 ~ 66290741 (+)
G1649873 NA non-coding upstream 58385 66286664 ~ 66287347 (+)
G1649865 NA non-coding upstream 74712 66269806 ~ 66271020 (+)
G1649897 NA non-coding downstream 1061 66348062 ~ 66348269 (+)
G1649903 NA non-coding downstream 13757 66360758 ~ 66361005 (+)
G1649914 NA non-coding downstream 33234 66380235 ~ 66380634 (+)
G1649915 NA non-coding downstream 40023 66387024 ~ 66387172 (+)
G1649614 NA other upstream 369492 65970505 ~ 65976240 (+)
G1649319 NA other upstream 743316 65600960 ~ 65602416 (+)
G1649309 NA other upstream 763150 65578439 ~ 65582582 (+)
G1649291 NA other upstream 800677 65544377 ~ 65545055 (+)

Expression


Co-expression Network