RNA id: TU1887822


Basic Information

Item Value
RNA id TU1887822
length 692
lncRNA type intronic
GC content 0.40
exon number 3
gene id G1649366
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 65683911 ~ 65685588 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atagtttcccatctaggttgtctatatctggtggcaatacagtctgctagtattctctgtagtttcccatctaggttgtctatatctggtggcaatacagtctgctagtattctctatagtttcccatctaggttgtctatatctggtggtaatacagtctgctagtattctctatagtgtcccatctaggttgtctatatctggtggcaatacagtctgctagtatTCTCTATAGTGTCCCATCTATGTTGTCTATATctggtggcaatacagtctgctagtattctctatagtttcccatctaggttgtctatatctggtggcaatacagtctgctagtattctctatagtgtcccatctaggttgtctatatatggtggtaatacagtctgctagtattctctatagtttcccatctaggttgtctatatctggtggcaatacagtctgctagtattctctatagtgtcccatctaggttgtctatatctggtggtaatacagtctgctagtattctctatagtgtcccatctaggttgtctatatctggtggcaatacagtctgctagtattctctatagtttcccatctaggttgtctatatctggtggcaatacagtctgctagtattctctatagtttcccatctaggttgtctatatctggtggcaatacagtctgctagtatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1887815 lncRNA upstream 5989 65676847 ~ 65677922 (+) True G1649362
TU1887779 lncRNA upstream 65341 65617266 ~ 65618570 (+) True G1649326
TU1887774 lncRNA upstream 74683 65607466 ~ 65609228 (+) True G1649321
TU1887765 lncRNA upstream 82226 65591377 ~ 65601685 (+) True G1649314
TU1887768 lncRNA upstream 88999 65588631 ~ 65594912 (+) True G1649316
TU1887745 lncRNA downstream 43416 65729004 ~ 65731122 (+) True G1649300
TU1887739 lncRNA downstream 101738 65787326 ~ 65812816 (+) False LOC110498653
TU1887741 lncRNA downstream 125182 65810770 ~ 65812816 (+) True LOC110498653
TU1887880 lncRNA downstream 128976 65814564 ~ 65815201 (+) True G1649418
TU1887882 lncRNA downstream 132436 65818024 ~ 65818342 (+) True G1649420
XM_036955425.1 mRNA upstream 156953 65515808 ~ 65526958 (+) False LOC110498317
XM_036955424.1 mRNA upstream 156954 65515841 ~ 65526957 (+) True LOC110498317
XM_036953841.1 mRNA upstream 392820 65250079 ~ 65291091 (+) False LOC110498315
XR_005037611.1 mRNA upstream 439618 65241682 ~ 65244293 (+) True LOC118941380
XM_036955417.1 mRNA upstream 444474 65230460 ~ 65239437 (+) False nat8
XM_021574945.2 mRNA downstream 660144 66345732 ~ 66347001 (+) True LOC110498312
XM_036955436.1 mRNA downstream 685438 66371026 ~ 66379174 (+) False LOC110498313
XM_021593675.1 mRNA downstream 1032846 66718434 ~ 66723596 (+) True cfd
XM_036955440.1 mRNA downstream 1257125 66942713 ~ 66975247 (+) False LOC110498318
XM_036955441.1 mRNA downstream 1257125 66942713 ~ 66975247 (+) False LOC110498318
TU1887771 other upstream 81495 65600960 ~ 65602416 (+) True G1649319
TU1887755 other upstream 101329 65578439 ~ 65582582 (+) True G1649309
TU1887728 other upstream 138856 65544377 ~ 65545055 (+) True G1649291
TU1887705 other upstream 220457 65461773 ~ 65463454 (+) True G1649268
TU1886551 other upstream 702968 64980364 ~ 64980943 (+) False G1648608
TU1887742 other downstream 49026 65734614 ~ 65812816 (+) False LOC110498653
TU1888162 other downstream 285867 65971455 ~ 65976240 (+) True G1649614

Expression Profile