XLOC_035463 (CU928205.1)


Basic Information

Item Value
gene id XLOC_035463
gene name CU928205.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 10068272 ~ 10074129 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00069589
ACTCTCCGCTCCAGCAGGTGGCAGAAATCCTCCATGTGACTGTTTACCAAATACCATGAAATGGAAAAGCAGGTGCACTTCACACAACTAAGCATCTCTGCAGCTTTCTTAGGAGTTGATGCCACAACCTAAAGGCTAAGAGCCACCAGATGCTGACATTTCAGAAAGAGGAAGTTCATTCAGTGAAAGCTTCCGTGGTGTCGGGAAAGTGAAATATGAAAGTTTCGGTTGACCAGAAAGAAGAAGTCTACCACCCATTAACTGGAAAAGACCCCCTCGCTCCACCTAGACTTCAGTTCCACATATTTCACAAACAATAGCAAGTCTGAGCGGCTGTATTTACACTGCCTGATGGGAAATAAGAGAGGAGAAACTTTCACTATGTGGAAAAGACCTGCTTGATCGTCCTTCAAAAAGATTCTTTCTCCACTAGAAGCATATGAGTTTACACCGACATCATGACTGGAGTAAATGGTTCCCATGGTAACGGTGTAGTCTGGCTGCCGCCCAAACCCAAAACAGACAGAGCATTCTGGGATATAATACATCAAAACCACCAGCATCACCTTACCAAACCCGGCCTCCCACACAGAAGCCAGTGCATCAATGTGTTGTATTTGGAAATAGTATCCATCATCATTCAAGAATTTTAGTAATCGTTTTAGAGCCTTGCATCTCAATTGGTTTTGTGCCAGGATGCAGATTTTACATTTGAAATCAAGTTTATGGTACAAGAGACAAATGTCtttgaatcagttgattaatatGCCG
>TCONS_00072144
GCTCCAGCAGGTGGCAGAAATCCTCCATGTGACTGTTTACCAAATACCATGAAATGGAAAAGCAGGTGCACTTCACACAACTAAGCATCTCTGCAGCTTTCTTAGGAGTTGATGCCACAACCTAAAGGTAAGAATAATGATCAAAGTATAATCAATCCACAAACTCAAAGATTGTTCATAGATGACACTGAGATTTTTCAATCAGCATCTTCTACCAGATCATTATTTGTTAGGCCACAACATCCAGCATATTGTTTTCAGTCAGAatcatgtttttttcccccttttgttTAATGATTCTTCTTGAAACTCTCCTTATATGAAAGGAATTTgaatttgtaaaagaaaaagaagaagaaaactaAACAATGAAGTAAATATATGgccttttctctttctcttctaGGCTAAGAGCCACCAGATGCTGACATTTCAGAAAGAGGAAGTTCATTCAGTGAAAGCTTCCGTGGTGTCGGGAAAGTGAAATATGAAAGTTTCGGTTGACCAGAAAGAAGAAGTCTACCACCCATTAACTGGAAAAGACCCCCTCGCTCCACCTAGACTTCAGTTCCACATATTTCACAAACAATAGCAAGTCTGAGCGGCTGTATTTACACTGCCTGATGGGAAATAAGAGGTGAGGTCAGAAATGTCAAAGCCGGATGACAATGCATGAGTGAACTCTCTTGTTATTGCCAACAGTTTACAACATCTTTTGGGCTGCGCTCagattttttgttctgtttgatTTGGCTGCGATTGCTCAAACTTTTCCAGTCAGCTCATTTCCTGTGAAGATATTAATTTCAAAacagtttgtcttttttttgatgtatagacattttttttatgttcccTGGGAAAAAATCCATGATCTCTGTATTGTTagcatatttagtttttatactaGCACTGTTGATTTgatgtttattaattaaattaaaataaatgaatgcgcCTGCACTAATAAAATGACTTGTGCTgcgtgttcaaactacttatttaaaatgagttgaaacaacacaattcttaattttttttgagacaactttgttttatattcagtccacttcattcattcgttttgcttaggcttagtcccttacttatcagtagtcgccatagcggaatgaaccgccaactattccggcatatgttttacacagtggatacatTTCCAGTCGCAactcagtactaggaaacacatatacactctctcattctctcacacacactcatacactcatacattatggccaatttagttcattcaattcacctatagtgcatgtctttggactgtgggggaaaccggaggaaacccatgtgaacacggggagaacatgcaaattccacacagaaatgcaagctggcccagtcgagactcgaagcagcgaccttcttgctgtgaggtcacagtgctaaccacagagccaccgtgccgcccactgttttatgtttaatccactttatTTTTTGTCTCATCTTGGATTGTATACTATAATTAAGCAGTATCACATGAATGCGAAGTTCAATACTACAGTAGTGCTGTTTTTGTCCACAATCACAGGAGTGAATGTTTAATTTTGATTGATAAAATAGCctttgttgctgacatggcattaaataataaaaaaaaaaattcattatcaGTTCTGATTTTTTACAACAGTACCAACAATACCTACATTTTCTATTACATTTTGATGAACAGACAGAAATTGCATGGAACTTTgttcgataataataataataataataatgcatttattgaTACTGTGCTTTTCTTGAAATGTAAAGCATAATACAGAAGAGAAAACAACATGAATTATCATTTAATGTGCAGTTATTGATTTGTATTAGTATCCGTTGTATTTGTATCAGTTAAAGTGCTGCCATTATTTAATCAAGAATGTTTCCACAAATTTTACTTTGATTAGGGTTCGAAATGCATGAGACATAGGAACTACAATTATACAACTTTTGCTTCTTTTTGTTTGTCCTTAGAGGAGAAACTTTCACTATGTGGAAAAGACCTGCTTGATCGTCCTTCAAAAAGATTCTTTCTCCACTAGAAGCATATGAGTTTACA

Function

GO:

id name namespace
GO:0022412 cellular process involved in reproduction in multicellular organism biological_process
GO:0048477 oogenesis biological_process
GO:0044703 multi-organism reproductive process biological_process
GO:0043900 regulation of multi-organism process biological_process
GO:0007276 gamete generation biological_process
GO:0007281 germ cell development biological_process
GO:2000241 regulation of reproductive process biological_process
GO:0007292 female gamete generation biological_process
GO:1905879 regulation of oogenesis biological_process
GO:0048599 oocyte development biological_process
GO:0048609 multicellular organismal reproductive process biological_process
GO:0019953 sexual reproduction biological_process
GO:0009994 oocyte differentiation biological_process
GO:0032504 multicellular organism reproduction biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000098300

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00069589 False 771 lncRNA 0.43 4 10068272 10074129
TCONS_00072144 True 2092 lncRNA 0.36 1 10068279 10070370

Neighbor

gene id symbol gene type direction distance location
XLOC_035462 si:dkey-8e10.2 coding upstream 54720 10001805 ~ 10013552 (+)
XLOC_035460 kcnd1 coding upstream 81294 9866351 ~ 9986978 (+)
XLOC_035461 CT573497.1 coding upstream 174484 9893672 ~ 9893788 (+)
XLOC_035459 NA coding upstream 207662 9854738 ~ 9860610 (+)
XLOC_035458 NA coding upstream 271843 9794868 ~ 9796429 (+)
XLOC_035464 NA coding downstream 94396 10168525 ~ 10173228 (+)
XLOC_035465 NA coding downstream 129964 10204093 ~ 10248143 (+)
XLOC_035466 pim1 coding downstream 230852 10304981 ~ 10308771 (+)
XLOC_035467 tbc1d22b coding downstream 265740 10339869 ~ 10449671 (+)
XLOC_035468 NA coding downstream 386865 10460994 ~ 10463748 (+)
XLOC_035454 BX284664.1 non-coding upstream 957082 9111072 ~ 9111190 (+)
XLOC_035442 CU928118.1 non-coding upstream 1746676 8321482 ~ 8321596 (+)
XLOC_035469 NA non-coding downstream 448156 10522285 ~ 10523028 (+)
XLOC_035470 NA non-coding downstream 467385 10541514 ~ 10552545 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G64059 NA non-coding CI01000010 null 8124810 ~ 8125023 (+)
tiger barb (Puntius tetrazona) G49242 NA unknown NC_056705.1 CM032074.1 1701393 ~ 1702013 (+)