XLOC_035462 (si:dkey-8e10.2)


Basic Information

Item Value
gene id XLOC_035462
gene name si:dkey-8e10.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 10001805 ~ 10013552 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00069588
TCCGTGTCAAGGCCGTCTGGAGGTCTACAACAGTAACCGTGAATGGGGTTTGGTCTGTCATTATGGCTGGAAAAAAGAAAATGGAGAGGTTGTTTGTCGATCATTGGGATGTGGAGATCATGTGCACTCTGGTATAGAAGAGGTTCGCTACAAAGATCAACCTCGACCAGAACTATATTTCATGGATCAAGTGCAGTGCAGATCTGATGGAGAGAGCCTTTGGAAATGCCCCTTTGTTGAACCAAAAGATCCAAAAAAATGCAAAGGAGACAGTTTTGTTGCTGTTGATTGTTCTGGAAATGTTACACTGCGTTTAAATCTGAATGGTCAGACTGATAAATGTGCTGGAGCAGTCGAGTTTCAAACACACAACAGCATCATTGGTGTCTGTAATTCTAATTGGGATAAACCAAAAGCTGACATGGTATGCAAGGAGCTTGGTTGTGGGGATCATTATTATATTCCCAAAGCtggaatatttaaaacagaacagATCAAAAAAAATGTGCAGCTTAATTGTGTTGGGAATGAGAAGTACTCTTGGCAGTGTATGGAGCCGGCAGCAGACTGCAAGGATCGAGCCAATGTCATCTGCAGCAAACACAGGAGGTTCCGTCTTAGGGGTGGCAATAATGTATGCTCTGGATCAGTGGAGGAGTACAATTTCCCCAAAAAATCATGGGATCCTCTTAAGCAGAAAGATGTTAACCCTGACTACATCTGTACTCAATTGAACTGTGGCTCCACTGGAAACTTCACAAATGATAACGGAACAAACATCCTGACATGCTCAGACAATGTCCGGCTTGGCAACTTTACGTCAAAGTGTTTTGGAGATGTTTACGTTGTTGTGAATGGAGCTGAATATGGAGTTTGCTACCCTGATTGGAGTCAGGATCTGCTCCGTCAGCTGGGGAAGGTGGTCTGTCGAGAGCTCGGCTGTGGTGAGGTGATGGATGTGAAACGGGGATCTTGGAATACTGGTTTGCTGAGTAATGTTGAGTGTCAAGGTGATGAGGAGTCACTTTGGCATTGCCTGGCAAAGCATGAGCATCGATCACATCGATGCGACACAACTAAAGTTACATGTTCAGGCAGCTTGGATGTGCGTTTGAAGGACGGTCTGGGTCAATGTTCTGGACGTGTGGAGGTGAAATGGGAAGAGTCATGGTGGTCCATTCAGCATGATAAGCTCACTGAAAACATCAATATGGTGTGTAAACATCTCGGATGTGGAAGTTTTGGCACAATGCCTGAAAAACTCTTCGCCAACGGGAATCTGCAAACACTTAAGCAATGGAGCCTTAAGTGTAAAAGCCCCTCAGCAAAGCTTCATGAGTGCTTTGAGAAAACAAATTTACCCCAAACACAACGAGAAGTAATGAAAATAATGTGTGaagAGGAGCAGCTGATGTTCTTTGAAGGTGATTCGCCCTGCCGGGGAAGAGTTCGCATCACGTCTGTTGATGGTACAGAACCAAAGGGAGAGATTAGGAAAAACGTCAGCGATATTTGCAACACAATGCAATGTGGAAATCTGCTTTCATTTGAGAGGGAGCCAAACATCACATCTGTCAATGTCACATGTTCAGGGTCAGTGAATGTTAAGCTTCAAAACCCGACTGCTGAAAGATGCTGGGGAGCAGTGGAGATCTGCAGAGGAGACAAGTGTGGAGGAGTTTGCAGAGAGACATGGACCTCTGAACACTCTCACAAAATCTGTCAGAATCTGGGCTGTGGAGATTCAGTTCAGAGCGAGTCATTTATGACGGATGTTAAACTATCTGTAAATGACTATAGTGTGCACTGTTCAAAATATGTGCAGAAAATGAGCATGTGCAATTTTATTCCCATCAAAGACTCCTGCACTAGTCCAGCCCAAGTGATATGCACAGGCAGCATTAAAGCTAGACTGGAGGATCCTAGAGACAAATGTGCTGgaattgtgtcactgttttaTGCTGGAACATGGACACCCGTCTGCCGTGATGGTCTTAATAGAGCGCTTAACAATGCAATCTGCAAGGAACTGGATTGTGGGGAGTTAGCTGATAGTTTGGATAAGGAGCTTGAGTTGGAAGGAATTCAATGTCCAAGTACTGCTAAATCTGTTTCCGAATGTGACTCCAAAACGATTTCTAGAAAAAGAAAATGTCATGTTGGCTTTTTGACATGCACAgGACACAAACGACTGCTCCTCTTTAATAAAGAACATGCATGCAAGGGTCCGGTGTACATGTATACTCAAAAAGAAACACTGTTGGTTAGCAGTCAGGGATGGGGCAAAGAAGAAGGCCAAATGCTATGCCAGTATCTGCAGTGTGGAAGCTACAAAACTCACTCAAGCATATCCAAAGATGATACACATGCAAGCAATTGGTGGAATAAGACTTATAACTGCTCGGGGAAGATGAATATGTGGGAATGCGAGAGAAACGATCAGCCTGTCCAGCTTCAACAGCAATTACACATTGAATGTGATGCTGAACCAGCTGTTAGGCTCTCCGAAAACTGCTCAGGCGAGGTGCTCATCGATAACAAGACAGTTTGTCAACGAGAGTCTCAATGGACCAATGACATGTCTAATGATTTATGTGACAGCCTCAAGTGTGGTAAAGCCATCCACTACTGGAGCACATCAGACCCCACTAAAAAATCCTGGCAATTGAGCTGCAATGGAAAAGAGACGCTATTGGGGCAATGCAGCCGGACAGAGGCCAGATGTCAAAAGATCTCTGTGGCCTGTCAAA

Function

symbol description
si:dkey-8e10.2 Predicted to enable scavenger receptor activity. Predicted to be located in membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000069542

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00069588 True 2750 mRNA 0.44 11 10001805 10013552

Neighbor

gene id symbol gene type direction distance location
XLOC_035460 kcnd1 coding upstream 14827 9866351 ~ 9986978 (+)
XLOC_035461 CT573497.1 coding upstream 108017 9893672 ~ 9893788 (+)
XLOC_035459 NA coding upstream 141195 9854738 ~ 9860610 (+)
XLOC_035458 NA coding upstream 205376 9794868 ~ 9796429 (+)
XLOC_035457 gripap1 coding upstream 209535 9699111 ~ 9792270 (+)
XLOC_035463 CU928205.1 coding downstream 54720 10068272 ~ 10074129 (+)
XLOC_035464 NA coding downstream 154973 10168525 ~ 10173228 (+)
XLOC_035465 NA coding downstream 190541 10204093 ~ 10248143 (+)
XLOC_035466 pim1 coding downstream 291429 10304981 ~ 10308771 (+)
XLOC_035467 tbc1d22b coding downstream 326317 10339869 ~ 10449671 (+)
XLOC_035454 BX284664.1 non-coding upstream 890615 9111072 ~ 9111190 (+)
XLOC_035442 CU928118.1 non-coding upstream 1680209 8321482 ~ 8321596 (+)
XLOC_035468 NA non-coding downstream 447442 10460994 ~ 10463748 (+)
XLOC_035469 NA non-coding downstream 508733 10522285 ~ 10523028 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000010_08159110_08177308 NA coding CI01000010 null 8159100 ~ 8177308 (-)