RNA id: TCONS_00069588


Basic Information

Item Value
RNA id TCONS_00069588
length 2750
RNA type mRNA
GC content 0.44
exon number 11
gene id XLOC_035462
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 10001805 ~ 10013552 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCCGTGTCAAGGCCGTCTGGAGGTCTACAACAGTAACCGTGAATGGGGTTTGGTCTGTCATTATGGCTGGAAAAAAGAAAATGGAGAGGTTGTTTGTCGATCATTGGGATGTGGAGATCATGTGCACTCTGGTATAGAAGAGGTTCGCTACAAAGATCAACCTCGACCAGAACTATATTTCATGGATCAAGTGCAGTGCAGATCTGATGGAGAGAGCCTTTGGAAATGCCCCTTTGTTGAACCAAAAGATCCAAAAAAATGCAAAGGAGACAGTTTTGTTGCTGTTGATTGTTCTGGAAATGTTACACTGCGTTTAAATCTGAATGGTCAGACTGATAAATGTGCTGGAGCAGTCGAGTTTCAAACACACAACAGCATCATTGGTGTCTGTAATTCTAATTGGGATAAACCAAAAGCTGACATGGTATGCAAGGAGCTTGGTTGTGGGGATCATTATTATATTCCCAAAGCtggaatatttaaaacagaacagATCAAAAAAAATGTGCAGCTTAATTGTGTTGGGAATGAGAAGTACTCTTGGCAGTGTATGGAGCCGGCAGCAGACTGCAAGGATCGAGCCAATGTCATCTGCAGCAAACACAGGAGGTTCCGTCTTAGGGGTGGCAATAATGTATGCTCTGGATCAGTGGAGGAGTACAATTTCCCCAAAAAATCATGGGATCCTCTTAAGCAGAAAGATGTTAACCCTGACTACATCTGTACTCAATTGAACTGTGGCTCCACTGGAAACTTCACAAATGATAACGGAACAAACATCCTGACATGCTCAGACAATGTCCGGCTTGGCAACTTTACGTCAAAGTGTTTTGGAGATGTTTACGTTGTTGTGAATGGAGCTGAATATGGAGTTTGCTACCCTGATTGGAGTCAGGATCTGCTCCGTCAGCTGGGGAAGGTGGTCTGTCGAGAGCTCGGCTGTGGTGAGGTGATGGATGTGAAACGGGGATCTTGGAATACTGGTTTGCTGAGTAATGTTGAGTGTCAAGGTGATGAGGAGTCACTTTGGCATTGCCTGGCAAAGCATGAGCATCGATCACATCGATGCGACACAACTAAAGTTACATGTTCAGGCAGCTTGGATGTGCGTTTGAAGGACGGTCTGGGTCAATGTTCTGGACGTGTGGAGGTGAAATGGGAAGAGTCATGGTGGTCCATTCAGCATGATAAGCTCACTGAAAACATCAATATGGTGTGTAAACATCTCGGATGTGGAAGTTTTGGCACAATGCCTGAAAAACTCTTCGCCAACGGGAATCTGCAAACACTTAAGCAATGGAGCCTTAAGTGTAAAAGCCCCTCAGCAAAGCTTCATGAGTGCTTTGAGAAAACAAATTTACCCCAAACACAACGAGAAGTAATGAAAATAATGTGTGaagAGGAGCAGCTGATGTTCTTTGAAGGTGATTCGCCCTGCCGGGGAAGAGTTCGCATCACGTCTGTTGATGGTACAGAACCAAAGGGAGAGATTAGGAAAAACGTCAGCGATATTTGCAACACAATGCAATGTGGAAATCTGCTTTCATTTGAGAGGGAGCCAAACATCACATCTGTCAATGTCACATGTTCAGGGTCAGTGAATGTTAAGCTTCAAAACCCGACTGCTGAAAGATGCTGGGGAGCAGTGGAGATCTGCAGAGGAGACAAGTGTGGAGGAGTTTGCAGAGAGACATGGACCTCTGAACACTCTCACAAAATCTGTCAGAATCTGGGCTGTGGAGATTCAGTTCAGAGCGAGTCATTTATGACGGATGTTAAACTATCTGTAAATGACTATAGTGTGCACTGTTCAAAATATGTGCAGAAAATGAGCATGTGCAATTTTATTCCCATCAAAGACTCCTGCACTAGTCCAGCCCAAGTGATATGCACAGGCAGCATTAAAGCTAGACTGGAGGATCCTAGAGACAAATGTGCTGgaattgtgtcactgttttaTGCTGGAACATGGACACCCGTCTGCCGTGATGGTCTTAATAGAGCGCTTAACAATGCAATCTGCAAGGAACTGGATTGTGGGGAGTTAGCTGATAGTTTGGATAAGGAGCTTGAGTTGGAAGGAATTCAATGTCCAAGTACTGCTAAATCTGTTTCCGAATGTGACTCCAAAACGATTTCTAGAAAAAGAAAATGTCATGTTGGCTTTTTGACATGCACAgGACACAAACGACTGCTCCTCTTTAATAAAGAACATGCATGCAAGGGTCCGGTGTACATGTATACTCAAAAAGAAACACTGTTGGTTAGCAGTCAGGGATGGGGCAAAGAAGAAGGCCAAATGCTATGCCAGTATCTGCAGTGTGGAAGCTACAAAACTCACTCAAGCATATCCAAAGATGATACACATGCAAGCAATTGGTGGAATAAGACTTATAACTGCTCGGGGAAGATGAATATGTGGGAATGCGAGAGAAACGATCAGCCTGTCCAGCTTCAACAGCAATTACACATTGAATGTGATGCTGAACCAGCTGTTAGGCTCTCCGAAAACTGCTCAGGCGAGGTGCTCATCGATAACAAGACAGTTTGTCAACGAGAGTCTCAATGGACCAATGACATGTCTAATGATTTATGTGACAGCCTCAAGTGTGGTAAAGCCATCCACTACTGGAGCACATCAGACCCCACTAAAAAATCCTGGCAATTGAGCTGCAATGGAAAAGAGACGCTATTGGGGCAATGCAGCCGGACAGAGGCCAGATGTCAAAAGATCTCTGTGGCCTGTCAAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000132894

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072143 lncRNA upstream 141195 9854738 ~ 9860610 (+) True XLOC_035459
TCONS_00072142 lncRNA upstream 205376 9794868 ~ 9796429 (+) True XLOC_035458
TCONS_00069583 lncRNA upstream 280267 9699127 ~ 9721538 (+) False XLOC_035457
TCONS_00069577 lncRNA upstream 1025427 8973437 ~ 8976378 (+) True XLOC_035453
TCONS_00072141 lncRNA upstream 1059349 8939795 ~ 8942456 (+) True XLOC_035451
TCONS_00069589 lncRNA downstream 54720 10068272 ~ 10074129 (+) False XLOC_035463
TCONS_00072144 lncRNA downstream 54727 10068279 ~ 10070370 (+) True XLOC_035463
TCONS_00071909 lncRNA downstream 154973 10168525 ~ 10170284 (+) False XLOC_035464
TCONS_00071910 lncRNA downstream 154973 10168525 ~ 10170870 (+) False XLOC_035464
TCONS_00071911 lncRNA downstream 155107 10168659 ~ 10173228 (+) False XLOC_035464
TCONS_00069585 mRNA upstream 14827 9866351 ~ 9986978 (+) False XLOC_035460
TCONS_00069586 mRNA upstream 14827 9867864 ~ 9986978 (+) True XLOC_035460
TCONS_00069582 mRNA upstream 209535 9699111 ~ 9792270 (+) False XLOC_035457
TCONS_00069584 mRNA upstream 268594 9715010 ~ 9733211 (+) True XLOC_035457
TCONS_00069581 mRNA upstream 301165 9688966 ~ 9700640 (+) True XLOC_035456
TCONS_00069591 mRNA downstream 291429 10304981 ~ 10308771 (+) False XLOC_035466
TCONS_00069592 mRNA downstream 291848 10305400 ~ 10307125 (+) True XLOC_035466
TCONS_00069593 mRNA downstream 326317 10339869 ~ 10413959 (+) False XLOC_035467
TCONS_00069595 mRNA downstream 336570 10350122 ~ 10449671 (+) False XLOC_035467
TCONS_00069594 mRNA downstream 336570 10350122 ~ 10449671 (+) False XLOC_035467
TCONS_00069587 other upstream 108017 9893672 ~ 9893788 (+) True XLOC_035461
TCONS_00069578 other upstream 890615 9111072 ~ 9111190 (+) True XLOC_035454
TCONS_00069563 other upstream 1297375 8699105 ~ 8704430 (+) True XLOC_035446
TCONS_00069553 other upstream 1680209 8321482 ~ 8321596 (+) True XLOC_035442
TCONS_00069525 other upstream 2673481 7320321 ~ 7328324 (+) False XLOC_035428
TCONS_00069600 other downstream 830400 10843952 ~ 10844068 (+) True XLOC_035474
TCONS_00069612 other downstream 1673705 11687257 ~ 11715282 (+) False XLOC_035484
TCONS_00069614 other downstream 1846476 11860028 ~ 11860144 (+) True XLOC_035486
TCONS_00069632 other downstream 3129613 13143165 ~ 13153578 (+) True XLOC_035494
TCONS_00069647 other downstream 3875266 13888818 ~ 13944141 (+) False XLOC_035504

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000010_08159110_08177308.mRNA True 2883 mRNA 0.44 11 CI01000010 8159100 ~ 8177308 (-)