RNA id: TCONS_00072142


Basic Information

Item Value
RNA id TCONS_00072142
length 963
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id XLOC_035458
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 9794868 ~ 9796429 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttgacataagaaagaaactcgtaaagtgttaattaataaataatgacagaatttccatttttgggtgatctatccctttaaatgtggcttttatttagctatttaaagACCATATTAGATCCAATGAATCTTGACCAAACCAATATAAGATAATTAATTGTTTAGTACATGTATTGAAAGTTTTAATGACATAAGATTATACGTTTAGCATCCATCTTATCCGTCAACGGTTTTGTATTGATTTAGAGATAAGTCTGGATATGTACttatatttttttgatttgtAAGATGTGAACGATTACTATTGCTTTAAGCTTTATCACGCGAACGGTTCTTGAGCGTTGCGTTTGTGCATGGTGCGTTAAATGCCTGTCCAATCCCTTCCTCTGGCTTCTGAAGGTAATCCTGACGAAATGCTTTTCTATATTCCATTCATTTTTAATCCTCCAGTGGGAAAATGCTAATCTTTAATTTTCACCTTAGAGGAAACTGACATATCAGCATTCACTTGGACCATTCTGCGCAAAAGGATGAAGGATGTTTGCCTTTGAAGCTCCagagttgttattatttttgcctTTGTACTCTTCTAATCTAATCTGCCAAACGAGCTCTTCTTTAATTAGGAATCGTCAGCTAATCATCACTAATTACATGTAAACAGATTCTATTAATAATGTCCGATCTCCCACTACGTCTGTACGGCTAATATTTATTCATGTGCATTTCATGGTCATGTTGGGACTTTCATAACTTGCAGTGATAATAAAGAATGGCTGGAAACACTAATGTCTGCGTGTCAGGCtttctgatgtgtgtgtgattgatttGACggatttttttaattgtgtaccTCTTTGTTATCAGTGCAGGTGTTCCTGAATATGGAACCGGTGGCGTTGCGGGTGAGATGCTGCAGCAGTTGAGCTAGAGGACAATCAGAcaggtttttcttttttgaaa

Function

GO:

id name namespace
GO:0090344 negative regulation of cell aging biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00069583 lncRNA upstream 73330 9699127 ~ 9721538 (+) False XLOC_035457
TCONS_00069577 lncRNA upstream 818490 8973437 ~ 8976378 (+) True XLOC_035453
TCONS_00069574 lncRNA upstream 852412 8937723 ~ 8942456 (+) False XLOC_035451
TCONS_00072141 lncRNA upstream 852412 8939795 ~ 8942456 (+) True XLOC_035451
TCONS_00069572 lncRNA upstream 865075 8927890 ~ 8929793 (+) True XLOC_035450
TCONS_00072143 lncRNA downstream 58309 9854738 ~ 9860610 (+) True XLOC_035459
TCONS_00069589 lncRNA downstream 271843 10068272 ~ 10074129 (+) False XLOC_035463
TCONS_00072144 lncRNA downstream 271850 10068279 ~ 10070370 (+) True XLOC_035463
TCONS_00071909 lncRNA downstream 372096 10168525 ~ 10170284 (+) False XLOC_035464
TCONS_00071910 lncRNA downstream 372096 10168525 ~ 10170870 (+) False XLOC_035464
TCONS_00069582 mRNA upstream 2598 9699111 ~ 9792270 (+) False XLOC_035457
TCONS_00069584 mRNA upstream 61657 9715010 ~ 9733211 (+) True XLOC_035457
TCONS_00069581 mRNA upstream 94228 9688966 ~ 9700640 (+) True XLOC_035456
TCONS_00069580 mRNA upstream 99300 9684479 ~ 9695568 (+) False XLOC_035456
TCONS_00069579 mRNA upstream 627753 9149436 ~ 9167115 (+) True XLOC_035455
TCONS_00069585 mRNA downstream 69922 9866351 ~ 9986978 (+) False XLOC_035460
TCONS_00069586 mRNA downstream 71435 9867864 ~ 9986978 (+) True XLOC_035460
TCONS_00069588 mRNA downstream 205376 10001805 ~ 10013552 (+) True XLOC_035462
TCONS_00069591 mRNA downstream 508552 10304981 ~ 10308771 (+) False XLOC_035466
TCONS_00069592 mRNA downstream 508971 10305400 ~ 10307125 (+) True XLOC_035466
TCONS_00069578 other upstream 683678 9111072 ~ 9111190 (+) True XLOC_035454
TCONS_00069563 other upstream 1090438 8699105 ~ 8704430 (+) True XLOC_035446
TCONS_00069553 other upstream 1473272 8321482 ~ 8321596 (+) True XLOC_035442
TCONS_00069525 other upstream 2466544 7320321 ~ 7328324 (+) False XLOC_035428
TCONS_00069522 other upstream 2478662 7315769 ~ 7316206 (+) False XLOC_035429
TCONS_00069587 other downstream 97243 9893672 ~ 9893788 (+) True XLOC_035461
TCONS_00069600 other downstream 1047523 10843952 ~ 10844068 (+) True XLOC_035474
TCONS_00069612 other downstream 1890828 11687257 ~ 11715282 (+) False XLOC_035484
TCONS_00069614 other downstream 2063599 11860028 ~ 11860144 (+) True XLOC_035486
TCONS_00069632 other downstream 3346736 13143165 ~ 13153578 (+) True XLOC_035494

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU76244 False 2083 lncRNA 0.39 1 CI01000010 8288166 ~ 8290248 (-)
eurasian perch (Perca fluviatilis) TU76244 False 302 lncRNA 0.50 3 NC_053116.1 40260127 ~ 40285378 (+)