XLOC_035457 (gripap1)


Basic Information

Item Value
gene id XLOC_035457
gene name gripap1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 9699111 ~ 9792270 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00069582
AGTCATTACTTATGGTGATGCTCCTGTCACCAAGCCAAAGCCTTTAGATGGGCGACAGAGGAAAGAAGCTGGTTTAACCTTCATCCTATCAGAATGTCAGTTAATTTGGAAATACAGAAGGACCAGGAGATATAGTAATAGTTGAAAGAGTTTTTATTCTGTCTGGTAACGTTGGTGTTTTTCTGTGACGAAGATGGCGCAAGCACTGTCAGAAGAGGAGTTCCATCGCATGCAGgctCAGCTCTTGGAGTTGAGAACACAGAATTACCAACTGTCGGATGAGCTGCGGAAAAATACAGCGGAGCTCAACAGTGTTCGTCAGAAGATCTCGAACTTGGAGAAGGACTATGTCAAAGCGCAAAAGGCTTTGAACAAGAGTAAGAAAGCACAGgaggTAGATGCCTTAATCAATGAGAATAAGATGCTTCAGGGCAAGTTACACAGTCAAGAGGATGATTTCAGACTGCAGAACAGCACCCTCATGCAAGAGCTGTCCAAGCTGTGTTCTCAGATTGAGCTGTTGGAATCAGAGAATCAAGGACTGAGGGATGGTAAAGGGCTGGAAAAACCCGCCTGCAGCCCTGCTTCTGCTCCAGTGGATGCTGAGCTACTGCGTCTACAGGCTGAAAACTCTGCCCTGCAGAAGAAGTTAACAGCTCTCCAGGAAATAGCAGATGGTAATGGTGGAAAAGCAGCGCTCGTTGATGGATCGACTGGCACTAATGGTGTCCAGTCAGATGCCAGTGGTCACAGTAATGACTCTTCTGCCTCAGGAAATGATCAAACCGATCAGGCCGACCTGCAAAGTGTTAAAGCAGAAAAGCGAGAAAATGAAGTGAGGGAGGTGGCATTAAAGCTTCAAACAGAAATGGAGGAGAAATGCTTACTGAGGGAACAACTCCAGACACTAGAGATTTCCAAGCAGGCAGAAATTACAAAACTACAAGAAGAAAGTGCTAAAttgactgataaattaaagaaaaaacaagagAGCTTCCAGCGGCTACAAGTCGAGAAGGAAGTACTTTACAATGACAGCAGGACTAAAATTGATGAGATCCAACAGAGGAAAGAGGAGGAGCTCAAATCCATAAACCTTCGTGTGCAGAAACTGCAGACGGATTTAATGGCCGCCAACCAGaATGTGGGCGAGCTTAAGGAGCAGTTGCAGAGTAAACAGAAAGAGCATGAGATGGCCATCCATGCGCTCAAAGATCAGGTCGCGTGTCAGAGCGCGGTCAGTCAGGAGCAGGTGGAGGGCATGCTGAGTGAAAACGATGCTCTCAGGACAAATCTAGCAGCTCTAGAACAGaTCCAAACAGTGAAGACTCAGGAACTGAATTTGCTGAGAGAGCAAAATCTTGCGCTGAACGCCGAGCTTCAGCAGAGACGTACTGACCAGGAGAGCTTTCTAGCACAGAGAGATGATCTCAACTCACAGCTACAGGAGTCAAATCGAGCGAACAGTCGACTTCTGGAGCAGCTCACTGAACTCGGTCTGGAGAAGGATAAGCTACTGCAGGATTTGGAGGAGGCCCGAAAGACAGCAGATAAGCGTAAGGTCATGCTGGATGAACTGGCCATTGAGACGGCGCAGGAAAAGTCTCGGCACAAAGAGGAGCTCAGTAATGTGCGCTTACAGCATGAGAAGGAGGTGCTGAGTATCAGAGCTCGATACGAGAAGGAGCTTCGAGGCCTCCATGAAGAGAAGAACCGCATTGAAGAGGAGATCCGCTCTCAGCTACGAGATGAGAGGGCACGTACCAAAGAGCTTGAAGGTCTTCAGCCATACGTGGAGGAGCTGAAGGCCCAGGTTCAGTCTATGGAGGGAACGAAGGGCTGGTTTGAGCGCAGACTCAAGGAAGCAGAGGAGACTATGGAAAGGAGCAAACTGGACCACGCAGAAGAGATCAAGCGGCTACAGAAAGATCACACTCTCCAGCTGGAGGCTAAAGCTGCAGAGGTGGATGCAGTCCAACAGCAAGTGACAGagatggagaaagagagagaagatcTCAACAACACAATCGGCAAACTCAAACAGGAGATTAAAGACACCGTGGATGGACAGAGAATCCTGGAGAAAAAAGGTAGTTCAGCGCTGAAAGACTTGAAAAGGCAGCTCCAtctagagagaaagagagccgATAAACTCCAGGAGCGACTGCAGGAAATCCTAACCAACACTAAAACCAGAACAGgtctGGAGGAGCTGGTTTTGTCAGAGATCAGTTCTCCGAGTCGAACGCAGCAGACAGGCGACAGCAGCAGCATTTCCTCCTTCAGCTACAGAGATATCATGAAAGACGGGGCTTCGGCTCCCAGCACCAATAAGTCAAACACCAGCAGCCCTCAGTCTCAACGGCCAGCTGACCTTTCAGACGATGAGGTTAGTGAGCTCTTCCAGAGGCTTGCTGAGGTCCAGCAGGAGAAGTGGATGCTGGAGGAGAAGGTGAAACACTTGGAGGTCAGCTGCGCTTCAATGGCCGATGACATCTGTAAAAAAAGCGCAATTATTGAGACGTACGTCATGGACAGCCGGAGAGATGTATCAGGAGGTGTTGGATTGGCTCATAGTGCTCAGCCTGACCGTGGAGGTTTGAGTTCGGTTCTGAGGGACTTGGTGAAACCCGGAGATGAGAATCTGCGCGAGATGAACAAAAAGCTGCAGAACATGCTGGAGGAACAACTGACAAAGAACATGCACCTACAGAAGgaTCTGGAAGTTTTGTCCCAGGAGATTGTGCGTTTGAGTAAAGACACCACCCCTGCGGAAAACTCCAAAACCACAGGCTAAAACTGGACGCCGTCCACCGGAAGATTTCAGTAcacctctctttctctttctctcatcTCTTCACGGCTACCAGGAGGTGCACTCTGCACTCATCTCTTACAAAAGACCTGCAAAGATCTCTGACATACAGGGAGCACAGAGGGTCAAAAAACAGTCCATCTGTGATTTACATACTACTGAATGTAACGTAacactttaaatgttttgtttgtcaggTGAGAACtggtagaaaaagaaaaaaagtctgtCGAGCAAACCCCTGGCTGCTTGACGTCTGTGAACTGTGTGTTCGGGACGTGACCTGGCCTCGTCAGGTCAGGATCACTTCACCACCACTAATTCAGGAAAGTGTATGTGCGATGTTGGCGTCCTCAAAACTGCTATCACTGTTGTATTGCCTGTTTTGTAAATTCGATCTGCTAAAGACACTTATTttgggtgtgtgaatgtgtggggCTAGAACGTTTCTTGTATTTATTTGTGCCAGAAATCCAAAAATCATCATGTTTGCCGTACATCTCTACAGTATGCTGCTTCTATTTGAATGAAAATTGAAcagaattgtttatttaaaaaataataattgtgtgCATTTGATTGCTGCGATAATTATTAGTTTTCGGACGAGGGTCTCTTAATGTTCG
>TCONS_00069583
GATGCTCCTGTCACCAAGCCAAAGCCTTTAGATGGGCGACAGAGGAAAGAAGCTGGTTTAACCTTCATCCTATCAGAATGTCAGTTAATTTGGAAATACAGAAGGACCAGGAGATATAGTAATAGTTGAAAGAGTTTTTATTCTGTCTGGTAACGTTGGTGTTTTTCTGTGACGAAGATGGCGCAAGCACTGTCAGAAGAGGAGTTCCATCGCATGCAGgctCAGCTCTTGGAGTTGAGAACACAGAATTACCAACTGTCGGATGAGCTGCGGAAAAATACAGCGGAGCTCAACAGTGTTCGTCAGAAGATCTCGAACTTGGAGAAGGACTATGTCAAAGCGCAAAAGGCTTTGAACAAGAGTAAGAAAGCACAGgaggTAGATGCCTTAATCAATGAGAATAAGATGCTTCAGGGCAAGTTACACAGTCAAGAGGATGATTTCAGACTGCAGAACAGCACCCTCATGCAAGAGCTGTCCAAGCTGTGTTCTCAGATTGAGCTGTTGGAATCAGAGAATCAAGGACTGAGGGATGGTAAAGGGCTGGAAAAACCCGCCTGCAGCCCTGCTTCTGCTCCAGTGGATGCTGAGCTACTGCGTCTACAGGCTGAAAACTCTGCCCTGCAGAAGAAGTTAACAGCTCTCCAGGAAATAGCAGATGGTAATGGTGGAAAAGCAGCGCTCGTTGATGGATCGACTGGCACTAATGGTGTCCAGTCAGATGCCAGTGGTCACAGTAATGACTCTTCTGCCTCAGGAAATGATCAAACCGATCAGGCCGACCTGCAAAGTGTTAAAGCAGAAAAGCGAGAAAATGAAGTGAGGGAGGTGGCATTAAAGCTTCAAACAGAAATGGAGGAGAAATGCTTACTGAGGGAACAACTCCAGACACTAGAGATTTCCAAGCAGGCAGAAATTACAAAACTACAAGAAGAAAGTGCTAAAttgactgataaattaaagaaaaaacaagagAGCTTCCAGCGGCTACAAGTCGAGAAGGAAGTACTTTACAATGACAGCAGGACTAAAATTGATGAGATCCAACAGAGGAAAGAGGAGGAGCTCAAATCCATAAACCTTCGTGTGCAGAAACTGCAGACGGATTTAATGGCCGCCAACCAGGTGAGATCCGCTCGGGCCCGCCCTGCCAAAATCTGCAGCACTAAACCCCATTTGTTGCACATCTCAGAGGGCAATCGATGGATGGCCTCTAAGGGAGTATGATGATAAGCATTTGCAAACCCTTGGGAGTGGACTAAAGACTGCAGTCAGTGCTTCAGGATCAGTCTCTGGCACTGAGGCACATCTGCAGAGATTAATGGAGCGTGGACACACTGCTGCATCCATCACTGTCATGCTAAAAATGCATTGAATCTTCCTGCTtgacagtttgtgtgtgtgtgatttcagaATGTGGGCGAGCTTAAGGAGCAGTTGCAGAGTAAACAGAAAGAGCATGAGATGGCCATCCATGCGCTCAAAGATCAGGTAGCCGTGTCTTCCTTCGTCTGATTTATGTGACTGCCACATCcagattactttttaaatgtattcagaTGCTAatagcagtgttggggaaagtaacTTTTGGATGTAAtgaattacaatattgagttactccccccaaAAAGTTACTTAGTTAACGATGCACTTTACAATCATCATTTACCTCTTCAAaagcacatgaaaaaaaaaa
>TCONS_00069584
GGCATTAAAGCTTCAAACAGAAATGGAGGAGAAATGCTTACTGAGGGAACAACTCCAGACACTAGAGATTTCCAAGCAGGCAGAAATTACAAAACTACAAGAAGAAAGTGCTAAAttgactgataaattaaagaaaaaacaagagAGCTTCCAGCGGCTACAAGTCGAGAAGGAAGTACTTTACAATGACAGCAGGACTAAAATTGATGAGATCCAACAGAGGAAAGAGGAGGAGCTCAAATCCATAAACCTTCGTGTGCAGAAACTGCAGACGGATTTAATGGCCGCCAACCAGaATGTGGGCGAGCTTAAGGAGCAGTTGCAGAGTAAACAGAAAGAGCATGAGATGGCCATCCATGCGCTCAAAGATCAGaTCCAAACAGTGAAGACTCAGGAACTGAATTTGCTGAGAGAGCAAAATCTTGCGCTGAACGCCGAGCTTCAGCAGAGACGTACTGACCAGGAGAGCTTTCTAGCACAGAGAGATGATCTCAACTCACAGCTACAGGAGTCAAATCGAGCGAACAGTCGACTTCTGGAGCAGCTCACTGAACTCGGTCTGGAGAAGGATAAGCTACTGC

Function

symbol description
gripap1 Predicted to be involved in neurotransmitter receptor transport, endosome to postsynaptic membrane; regulation of intracellular transport; and regulation of modification of synaptic structure. Predicted to be active in glutamatergic synapse and postsynaptic recycling endosome. Predicted to be extrinsic component of postsynaptic early endosome membrane. Orthologous to human GRIPAP1 (GRIP1 associated protein 1).

GO:

id name namespace
GO:1905244 regulation of modification of synaptic structure biological_process
GO:0098887 neurotransmitter receptor transport, endosome to postsynaptic membrane biological_process
GO:0099152 regulation of neurotransmitter receptor transport, endosome to postsynaptic membrane biological_process
GO:0099158 regulation of recycling endosome localization within postsynapse biological_process
GO:0098837 postsynaptic recycling endosome cellular_component
GO:0098978 glutamatergic synapse cellular_component
GO:0098998 extrinsic component of postsynaptic early endosome membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-922 Predicted to be involved in neurotransmitter receptor transport, endosome to postsynaptic membrane; regulation of intracellular transport; and regulation of modification of synaptic structure. Predicted to be active in glutamatergic synapse and postsynaptic recycling endosome. Predicted to be extrinsic component of postsynaptic early endosome membrane. Orthologous to human GRIPAP1 (GRIP1 associated protein 1).

Ensembl:

ensembl_id ENSDARG00000063069

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00069582 False 3441 mRNA 0.47 28 9699111 9792270
TCONS_00069583 False 1699 lncRNA 0.45 13 9699127 9721538
TCONS_00069584 True 581 mRNA 0.45 8 9715010 9733211

Neighbor

gene id symbol gene type direction distance location
XLOC_035455 pnck coding upstream 531996 9149436 ~ 9167115 (+)
XLOC_035454 BX284664.1 coding upstream 587921 9111072 ~ 9111190 (+)
XLOC_035453 bcap31 coding upstream 669936 8973425 ~ 9029175 (+)
XLOC_035452 slc35a2 coding upstream 741432 8947623 ~ 8957679 (+)
XLOC_035451 si:dkey-83k24.5 coding upstream 756655 8936912 ~ 8942456 (+)
XLOC_035458 NA coding downstream 2598 9794868 ~ 9796429 (+)
XLOC_035459 NA coding downstream 62468 9854738 ~ 9860610 (+)
XLOC_035460 kcnd1 coding downstream 74081 9866351 ~ 9986978 (+)
XLOC_035461 CT573497.1 coding downstream 101402 9893672 ~ 9893788 (+)
XLOC_035462 si:dkey-8e10.2 coding downstream 209535 10001805 ~ 10013552 (+)
XLOC_035442 CU928118.1 non-coding upstream 1377515 8321482 ~ 8321596 (+)
XLOC_035435 NA non-coding upstream 1849317 7824772 ~ 7849794 (+)
XLOC_035432 CR385024.1 non-coding upstream 2047141 7644265 ~ 7651970 (+)
XLOC_035431 NA non-coding upstream 2103017 7587459 ~ 7596094 (+)
XLOC_035463 CU928205.1 non-coding downstream 276002 10068272 ~ 10074129 (+)
XLOC_035464 NA non-coding downstream 376255 10168525 ~ 10173228 (+)

Expression


Co-expression Network