XLOC_035455 (pnck)


Basic Information

Item Value
gene id XLOC_035455
gene name pnck
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 9149436 ~ 9167115 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00069579
ATGCCTCTGTTGAGAGATCTTCGGAAAAAAGATGACATCAATGCCGTTTATGAGCTGAAAGAGAAACTGGGAGAGGGCTCGTTCTCTGAGGTTCGAGTGGCTCAGCACAGATGCACCCAGAAGCTGGTGGCTGTCAAGTGCATCCGGAAGAGAGCGCTAAAGGGAAAAGAATCCATGCTGGAGAATGAGGTTGCGGTATTACGCAGAATAAATCACGAAAATATTGTGTCCCTGGAGGAAACCTTTGAGACTCCTACTAAACTGTATTTGGTAATGACACTGCTGACAGGAGGTGAGCTGCTGAACAGGATTCTGGAGAGAGGCAGTTACACAGAGAAAGATGCCAGTCGGGTCATTTACCAGGTGCTGCAAGCCGTGAAGTATCTGCATCAGCTGGGCGTCGTGCATCGCGATCTAAAGCCTGAGAATTTAATATTTGAGACTCCATTAGAAGACTCCAAAATTGTCATCAGTGACTTTGGCCTGTCTAAAATGGAAGAGCAGGGGGCTCTGTCCACCGCATGTGGGACTCCAGCATATGTCGCTCCTGAACTTCTACAGCAGAAGACATACGGTAAAGAGGTGGATCTCTGGGCCATTGGAGTGATTACGTTCATTCTACTCTGCGGGTATCCTCCTTTCTACGATGACAATGACACACAACTTTACAAGCTCATCATAAAGGCTGAATATGAATTCGACTCTCCATACTGGAATGACATCTCTGACTCCgCGAAAGACTTCATAGTTCACTTACTGCAGAAGGATCCAGCGAAGAGGTTCAATTGTGAGCAGGCCTCGCAGCATCCTTGGATATCAGGAGGTGCGGCTCTGGACAGGAACATTCATGGCTCGGTTTCAGCACAGATTCAGAAGAACTTTGCCAAGAGTCACTGGAAGAGGGCCTTTAATGCCACTATTATTGTGCATCATTTAACCAAAAAAGCCC

Function

symbol description
pnck Predicted to enable calmodulin binding activity and calmodulin-dependent protein kinase activity. Predicted to be involved in peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Orthologous to human PNCK (pregnancy up-regulated nonubiquitous CaM kinase).

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016740 transferase activity molecular_function
GO:0005516 calmodulin binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0004683 calmodulin-dependent protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
ko01001 Protein kinases

ZFIN:

id description
ZDB-GENE-081105-127 Predicted to enable calmodulin binding activity and calmodulin-dependent protein kinase activity. Predicted to be involved in peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Orthologous to human PNCK (pregnancy up-regulated nonubiquitous CaM kinase).

Ensembl:

ensembl_id ENSDARG00000043648

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00069579 True 949 mRNA 0.47 10 9149436 9167115

Neighbor

gene id symbol gene type direction distance location
XLOC_035454 BX284664.1 coding upstream 38246 9111072 ~ 9111190 (+)
XLOC_035453 bcap31 coding upstream 120261 8973425 ~ 9029175 (+)
XLOC_035452 slc35a2 coding upstream 191757 8947623 ~ 8957679 (+)
XLOC_035451 si:dkey-83k24.5 coding upstream 206980 8936912 ~ 8942456 (+)
XLOC_035450 pim2 coding upstream 215367 8927870 ~ 8934069 (+)
XLOC_035456 mon1ba coding downstream 517364 9684479 ~ 9700640 (+)
XLOC_035457 gripap1 coding downstream 531996 9699111 ~ 9792270 (+)
XLOC_035458 NA coding downstream 627753 9794868 ~ 9796429 (+)
XLOC_035459 NA coding downstream 687623 9854738 ~ 9860610 (+)
XLOC_035460 kcnd1 coding downstream 699236 9866351 ~ 9986978 (+)
XLOC_035442 CU928118.1 non-coding upstream 827840 8321482 ~ 8321596 (+)
XLOC_035435 NA non-coding upstream 1299642 7824772 ~ 7849794 (+)
XLOC_035432 CR385024.1 non-coding upstream 1497466 7644265 ~ 7651970 (+)
XLOC_035431 NA non-coding upstream 1553342 7587459 ~ 7596094 (+)
XLOC_035461 CT573497.1 non-coding downstream 726557 9893672 ~ 9893788 (+)
XLOC_035463 CU928205.1 non-coding downstream 901157 10068272 ~ 10074129 (+)
XLOC_035464 NA non-coding downstream 1001410 10168525 ~ 10173228 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000010_08624504_08629844 PNCK coding CI01000010 null 8624342 ~ 8629844 (-)