XLOC_035446 (uxt)


Basic Information

Item Value
gene id XLOC_035446
gene name uxt
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 8699085 ~ 8704430 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00069562
AAACAAGTGTGGAGCCACGTGACAGACCGAAGGAAGGTTTAGCTTCATTTAACGTACTCGATACTTCATATATTTGCTACTACAATATATTAATCTGTCATATGTAAGCTTTAATCGCTGCATCAGCCCAGCGACGTGCTGTTAATGTTTGATGCACATTAATATTAGAAACATCGATTGCTATTAAATAAAACTTCGATCTGTTATCATCTCATATCATGACTTCTGGCACATCTGTTATTAATGACAAAGTCTTGCAGTATGAGACATTCATCAGTGAAGTATTAAGACGAGACCTGCAGAAAGTGCTGGAGCAAAGAGATGCTGTGTATGAGAAAATCGCACAATACCTGCAGCTGAAGAACACAATACAAAGCATTCAGGAAAGCGGCAGCAAAGAACTGAAAACCGATGTTGACCTTGGCTGCAATTTCTATGTGCAGGCTCATGTACCTGATGCATCAAGAATATATGTGGCAGTCGGATATGGATTCTTTGTCGAATTCACGCACGCAGAGGCTTTGAAGTTCATTGAAAAGAAGACAAATCAGCTCACAGAGTATACTGAAGTTCTTACCAAAGATGCAGCAAAGATAAAAGCCAACATTCGCATGGTTCTGGAGGGGTTGAGGGAATTGCAAGGACTGAAGGATCTTCCAGAGGACAGAAGGAGAGAGGTGTTTTAGTACCATACACCAATCACAGCACAGTGTATTCATCTTTGCACATATGACTGCAATGTTTGTTTCAAACAATGTGAACATTATGGCAATCATGTTCAGAAGAACGTTGCCTTTTAACAGGTTGTACTGTTGTTTCCAGAAATAGCTGCTGAATAAAGTGTAAAATTTTTCAGTTAA
>TCONS_00069563
GACAGACCGAAGGAAGGTTTAGCTTCATTTAACGTACTCGATACTTCATATATTTGCTACTACAATATATTAATCTGTCATATGTAAGCTTTAATCGCTGCATCAGCCCAGCGACGTGCTGTTAATGTTTGATGCACATTAATATTAGAAACATCGATTGCTATTAAATAAAACTTCGATCTGTTATCATCTCATATCATGACTTCTGGCACATCTGTTATTAATGACAAAGTCTTGCAGTATGAGACATTCATCAGTGAAGTATTAAGACGAGACCTGCAGAAAGTGGTGGAGCAAAAGAGATGCTGTGGATGAGAAAATACGGCAATACCTGCAGCTGAAGaacacaatataataaaatatagttcaagaacactatagtatttaccataaattactatagtattttttcatttgAGTACTCTCTGCTCTGCCAGGAAAGTGCTGGAGCAAAGAGATGCTGTGTATGAGAAAATCGCACAATACCTGCAGCTGAAGAACACAATACAAAGCATTCAGGAAAGCGGCAGCAAAGAACTGAAAACCGATGTTGACCTTGGCTGCAATTTCTATGTGCAGGCTCATGTACCTGATGCATCAAGAATATATGTGGCAGTCGGATATGGATTCTTTGTCGAATTCACGCACGCAGAGGCTTTGAAGTTCATTGAAAAGAAGACAAATCAGCTCACAGAGTATACTGAAGTTCTTACCAAAGATGCAGCAAAGATAAAAGCCAACATTCGCATGGTTCTGGAGGGGTTGAGGGAATTGCAAGGACTGAAGGATCTTCCAGAGGACAGAAGGAGAGAGGTGTTTTAGTACCATACACCAATCACAGCACAGTGTATTCATCTTTGCACATATGACTGCAATGTTTGTTTCAAACAATGTGAACATTATGGCAATCATGTTCAGAAGAACGTTGCCTTTTAACAGGTTGTACTGTTGTTTCCAGAAATAGCTGCTGAATAAAGTGTAAAATTTTTCAGTTAA

Function

symbol description
uxt Predicted to enable transcription corepressor activity. Acts upstream of or within angiogenesis and negative regulation of Notch signaling pathway. Located in chromatin. Is expressed in head and trunk. Orthologous to human UXT (ubiquitously expressed prefoldin like chaperone).

GO:

id name namespace
GO:0045746 negative regulation of Notch signaling pathway biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0001525 angiogenesis biological_process
GO:0006457 protein folding biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0000785 chromatin cellular_component
GO:0000930 gamma-tubulin complex cellular_component
GO:0005634 nucleus cellular_component
GO:0016592 mediator complex cellular_component
GO:0016272 prefoldin complex cellular_component
GO:0048487 beta-tubulin binding molecular_function
GO:0003712 transcription coregulator activity molecular_function
GO:0003714 transcription corepressor activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-118 Predicted to enable transcription corepressor activity. Acts upstream of or within angiogenesis and negative regulation of Notch signaling pathway. Located in chromatin. Is expressed in head and trunk. Orthologous to human UXT (ubiquitously expressed prefoldin like chaperone).

Ensembl:

ensembl_id ENSDARG00000019339

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00069562 False 860 mRNA 0.39 6 8699085 8704430
TCONS_00069563 True 996 nonsense_mediated_decay 0.38 6 8699105 8704430

Neighbor

gene id symbol gene type direction distance location
XLOC_035445 usp11 coding upstream 16152 8643901 ~ 8682933 (+)
XLOC_035444 grm6a coding upstream 75077 8532407 ~ 8624008 (+)
XLOC_035443 comta coding upstream 218506 8459192 ~ 8480579 (+)
XLOC_035441 srpk3 coding upstream 359713 8291492 ~ 8339372 (+)
XLOC_035442 CU928118.1 coding upstream 377489 8321482 ~ 8321596 (+)
XLOC_035447 elk1 coding downstream 8016 8712446 ~ 8744898 (+)
XLOC_035448 si:ch211-180f4.1 coding downstream 141502 8845932 ~ 8848166 (+)
XLOC_035449 otud5a coding downstream 156472 8860902 ~ 8922631 (+)
XLOC_035450 pim2 coding downstream 223440 8927870 ~ 8934069 (+)
XLOC_035451 si:dkey-83k24.5 coding downstream 232482 8936912 ~ 8942456 (+)
XLOC_035435 NA non-coding upstream 849291 7824772 ~ 7849794 (+)
XLOC_035432 CR385024.1 non-coding upstream 1047115 7644265 ~ 7651970 (+)
XLOC_035431 NA non-coding upstream 1102991 7587459 ~ 7596094 (+)
XLOC_035425 CU862015.1 non-coding upstream 1605202 7086916 ~ 7093883 (+)
XLOC_035454 BX284664.1 non-coding downstream 406642 9111072 ~ 9111190 (+)
XLOC_035458 NA non-coding downstream 1090438 9794868 ~ 9796429 (+)
XLOC_035459 NA non-coding downstream 1150308 9854738 ~ 9860610 (+)
XLOC_035461 CT573497.1 non-coding downstream 1189242 9893672 ~ 9893788 (+)
XLOC_035463 CU928205.1 non-coding downstream 1363842 10068272 ~ 10074129 (+)

Expression


Co-expression Network