XLOC_035447 (elk1)


Basic Information

Item Value
gene id XLOC_035447
gene name elk1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 8712446 ~ 8744898 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00069564
TGTCAACTAACATGGAGGGAGAGGTGCATGTGTTACATAACAGCCAAACGCAATTAAATCACCGACTTTTGACACCCAACAAGCACAGCGATGGACGTGAATTAATCTCCAAAGAATAAGACAGGCCATAGACCGATTTATTTGGGAGTGATGGAGTCGAATCCGCTGATCAGCGCGATGGATCCGTCCATTACATTGTGGCAGTTCCTGCTTCACCTCCTGGATGATCAGAATCAGAAGCACTTGATATCCTGGACATCTGGGGACGGGGAATTCAAACTGCTGGACGCTGAGGAGGTGGCCAGACTCTGGGGTCTTCGCAAGAACAAAACCAACATGAACTATGATAAACTAAGCAGGGCACTTCGTTACTACTATGATAAGAACATTATTAAGAAAGTTAGCGGTCAGAAGTTTGTCTACAAGTTTGTAACCTATCCGGACCCAAACTCTGCTGATGGACTGAAGGGGACCGAGGATTCCCAGAGGGCCTCTACGGGGGAGAAACTGGAGCTGTCCATCCAGACCAAACCTATGGGTGGTGCTACCACCGCCAACCAATGCCTCTCCAAGAGCCTGCAGGTTCAGCGCTCCTCCCCAAGTTCAGTGCAACGCAGCTCCCGCAACGATTACATGAAGTCTGGTCTCTACTCCACTTTCACTATTCAGTCTCTGCAGACGCCCTGCAAAGGCAACTCCAAACTCATCAAAACAGAGCATGTCTTAAATGACTGCAATCCTAAACCTGCATCTCTGGACCGCACCATGCATGAGATGCGAGTTTGTCAGACAGA
>TCONS_00069565
ATGGTCTGTTTTCTGTGCCCTGTAGCGATGGATCCGTCCATTACATTGTGGCAGTTCCTGCTTCACCTCCTGGATGATCAGAATCAGAAGCACTTGATATCCTGGACATCTGGGGACGGGGAATTCAAACTGCTGGACGCTGAGGAGGTGGCCAGACTCTGGGGTCTTCGCAAGAACAAAACCAACATGAACTATGATAAACTAAGCAGGGCACTTCGTTACTACTATGATAAGAACATTATTAAGAAAGTTAGCGGTCAGAAGTTTGTCTACAAGTTTGTAACCTATCCGGACCCAAACTCTGCTGATGGACTGAAGGGGACCGAGGATTCCCAGAGGGCCTCTACGGGGGAGAAACTGGAGCTGTCCATCCAGACCAAACCTATGGGTGGTGCTACCACCGCCAACCAATGCCTCTCCAAGAGCCTGCAGGTTCAGCGCTCCTCCCCAAGTTCAGTGCAACGCAGCTCCCGCAACGATTACATGAAGTCTGGTCTCTACTCCACTTTCACTATTCAGTCTCTGCAGACGCCCTGCAAAGGCAACTCCAAACTCATCAAAACAGAGCATGTCTTAAATGACTGCAATCCTAAACCTGCATCTCTGGACCGCACCATGCATGAGATGCGAGTTTGTCAGACAGAAGGACAGCAGGGAAGTGTTCAAGCGCAGTCGACTGTGGAGAGCAGCAATCTGCAGGTGATAGTCACCCAGCCTTCACCATGTGCTACACCAGCCCTCAGCCCCCAGACTCCCTCCGGCTCTGCCACTGCAATCACGAACAATCAAGCACAGAAGAGCCAGAGTTTAGGAGACCCACCACAGATCTACCTGTCTGACCCCAGTTCTCTAACCTCGCTCATTCCTCTGCCTCCTGGAGAATGTGTTGTCAACCCCTCTCAGCATGTGTTTGTGGTCATAAAGCCTCCGTCTGTTGGGCAGTCCAAAGAGTCCAGCCTTTCAGCGGATGAAGACTTGCTAGAGATTGTCAGTCTGGAGGACAAAGCAGATGTTGAGCCGGTGTCTGCAGTGCCTGTTCCTGGAGTTACAGATGCCCCAATCCCTGTGGATGCTACATCCCCTTGCGTGGAGCCAGTGGGCCCGCCGGTTGGAGAAGGAGAAGTGAAAGAGAAACCTGAGCTACCTGAGGACACCAATACTGCATCAGCCTCCCTCCAGGCGAGCACGCAGGACGTCCAGCCTCCTAAATCAAAGAAGCCACGTGTGCTGGAGCTGCCATCCTCGTCTACACTGTTGCCCCCTGGACTCTCACTGGATAAGGTCAATGCAGCGGTGAACAGCCTGCTTGCCTCTGGCAGTGCCACAAACACCTTAACACCCACAGTCATCACCTCACATTCCCTGACTCCAGTGCTGCTGACACCGAGTCCGCTGCCATCAACCATTCACTTCTGGAGCACGCTCAGTCCTATCGCTCCACGCAGCCCTGCCAAGCTCTCCTTCCAGttccccTCTAACGGAAGCAATCAGATCCAGATCCCAGCACTGAGCGTGGACGGCCTTTCCACACCTGTCGTTCTCTCCCCTGGACCACAGAAACCATAA
>TCONS_00069566
AACAATCAAGCACAGAAGAGCCAGAGTTTAGGAGACCCACCACAGATCTACCTGTCTGACCCCAGTTCTCTAACCTCGCTCATTCCTCTGCCTCCTGGAGAATGTGTTGTCAACCCCTCTCAGCATGTGTTTGTGGTCATAAAGCCTCCGTCTGTTGGGCAGTCCAAAGAGTCCAGCCTTTCAGCGGATGAAGACTTGCTAGAGATTGTCAGTCTGGAGGACAAAGCAGATGTTGAGCCGGTGTCTGCAGTGCCTGTTCCTGGAGTTACAGATGCCCCAATCCCTGTGGATGCTACATCCCCTTGCGTGGAGCCAGTGGGCCCGCCGGTTGGAGAAGGAGAAGTGAAAGAGAAACCTGAGCTACCTGAGGACACCAATACTGCATCAGCCTCCCTCCAGGCGAGCACGCAGGACGTCCAGCCTCCTAAATCAAAGAAGCCACGTGTGCTGGAGCTGCCATCCTCGTCTACACTGTTGCCCCCTGGACTCTCACTGGATAAGGTCAATGCAGCGGTGAACAGCCTGCTTGCCTCTGGCAGTGCCACAAACACCTTAACACCCACAGTCATCACCTCACATTCCCTGACTCCAGTGCTGCTGACACCGAGTCCGCTGCCATCAACCATTCACTTCTGGAGCACGCTCAGTCCTATCGCTCCACGCAGCCCTGCCAAGCTCTCCTTCCAGttccccTCTAACGGAAGCAATCAGATCCAGATCCCAGCACTGAGCGTGGACGGCCTTTCCACACCTGTCGTTCTCTCCCCTGGACCACAGAAACCATAA
>TCONS_00069567
GAAGACTTGCTAGAGATTGTCAGTCTGGAGGACAAAGCAGATGTTGAGCCGGTGTCTGCAGTGCCTGTTCCTGGAGTTACAGATGCCCCAATCCCTGTGGATGCTACATCCCCTTGCGTGGAGCCAGTGGGCCCGCCGGTTGGAGAAGGAGAAGTGAAAGAGAAACCTGAGCTACCTGAGGACACCAATACTGCATCAGCCTCCCTCCAGGCGAGCACGCAGGACGTCCAGCCTCCTAAATCAAAGAAGCCACGTGTGCTGGAGCTGCCATCCTCGTCTACACTGTTGCCCCCTGGACTCTCACTGGATAAGGTCAATGCAGCGGTGAACAGCCTGCTTGCCTCTGGCAGTGCCACAAACACCTTAACACCCACAGTCATCACCTCACATTCCCTGGTGAGTCATTCAGCTCTTCATTAGGCTTGTTTTAATATCGCACAATATGTACAATTTATTTTCATGTAATAGAACAGTGttgtatattttgctgacttgaATAATTACACAATCTCAaacgttttgaagaatgttcaaatccagagaaataagcctttttt

Function

symbol description
elk1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in pharyngeal arch 3-7. Orthologous to human ELK1 (ETS transcription factor ELK1).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko04010 MAPK signaling pathway
ko04012 ErbB signaling pathway
ko04014 Ras signaling pathway
ko04510 Focal adhesion
ko04910 Insulin signaling pathway
ko04912 GnRH signaling pathway
ko04921 Oxytocin signaling pathway
ko05200 Pathways in cancer
ko05205 Proteoglycans in cancer
ko05225 Hepatocellular carcinoma
ko05213 Endometrial cancer
ko05166 Human T-cell leukemia virus 1 infection
ko05161 Hepatitis B
ko05163 Human cytomegalovirus infection
ko05140 Leishmaniasis
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-090529-5 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in pharyngeal arch 3-7. Orthologous to human ELK1 (ETS transcription factor ELK1).

Ensembl:

ensembl_id ENSDARG00000078066

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00069564 False 794 mRNA 0.49 4 8712446 8729919
TCONS_00069565 False 1566 mRNA 0.53 8 8726958 8744898
TCONS_00069566 False 786 mRNA 0.55 5 8735285 8744898
TCONS_00069567 True 557 lncRNA 0.48 3 8735474 8738023

Neighbor

gene id symbol gene type direction distance location
XLOC_035446 uxt coding upstream 8016 8699085 ~ 8704430 (+)
XLOC_035445 usp11 coding upstream 29513 8643901 ~ 8682933 (+)
XLOC_035444 grm6a coding upstream 88438 8532407 ~ 8624008 (+)
XLOC_035443 comta coding upstream 231867 8459192 ~ 8480579 (+)
XLOC_035441 srpk3 coding upstream 373074 8291492 ~ 8339372 (+)
XLOC_035448 si:ch211-180f4.1 coding downstream 101034 8845932 ~ 8848166 (+)
XLOC_035449 otud5a coding downstream 116004 8860902 ~ 8922631 (+)
XLOC_035450 pim2 coding downstream 182972 8927870 ~ 8934069 (+)
XLOC_035451 si:dkey-83k24.5 coding downstream 192014 8936912 ~ 8942456 (+)
XLOC_035452 slc35a2 coding downstream 202725 8947623 ~ 8957679 (+)
XLOC_035442 CU928118.1 non-coding upstream 390850 8321482 ~ 8321596 (+)
XLOC_035435 NA non-coding upstream 862652 7824772 ~ 7849794 (+)
XLOC_035432 CR385024.1 non-coding upstream 1060476 7644265 ~ 7651970 (+)
XLOC_035431 NA non-coding upstream 1116352 7587459 ~ 7596094 (+)
XLOC_035425 CU862015.1 non-coding upstream 1618563 7086916 ~ 7093883 (+)
XLOC_035454 BX284664.1 non-coding downstream 366174 9111072 ~ 9111190 (+)
XLOC_035458 NA non-coding downstream 1049970 9794868 ~ 9796429 (+)
XLOC_035459 NA non-coding downstream 1109840 9854738 ~ 9860610 (+)
XLOC_035461 CT573497.1 non-coding downstream 1148774 9893672 ~ 9893788 (+)
XLOC_035463 CU928205.1 non-coding downstream 1323374 10068272 ~ 10074129 (+)

Expression


Co-expression Network