XLOC_035449 (otud5a)


Basic Information

Item Value
gene id XLOC_035449
gene name otud5a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 8860902 ~ 8922631 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00069569
GTTGTGTGGCAACAGCAGGACCGAGGGACGGAAGacggtttgtttttgttctgttatCCGCCGTTTTTACCCTCAAAATCACCTCGAGTTGAATCAAATTCGCTCCGGGGTGAAAGGGGCGAACATTACAACACACAAGACGctcaagtttaaatgttaaaccGCGTTCGGAGGCGTTAAAACGGACACCCTTCCTGAACGGTCATGACGATCCTGCCGAAGAAGAAGCCGAACTCGTCGGTCGGTGTGTCCGATCACCCTGACGACCCCGACCGACGGACCGGCTCCGACCCGCACCAGCATCAGCACCAACACTCCCACGGGGTCCGGCCGGGTGCGAGGCCCCGCGCTTCCCCGCCACCCTGGTCCTATCAAGCCGCTCCGCCGGCGTCCAGAGAGGACAGGCGAACTGAATCCAGCTCCCGGCCGCAGCAGGCCTCTCCTCCGCCGGTGGGTGCCGGGTCCTCGGGTGGCCCCGGGGACGCGACAGGGATGGCGTGCGTGTCAGGCAATCGGGCTGAGCTGTCAGGTGGGGTGGGCTGTGGAGGTGGCATGGGAGGTTGCTGTTCGGGGCCTGGGCTCAGTAAGAGAAGACGACAAGCGACTTGCTCCGGTGGGGTGGCCGGTGGAGGCACCGGACCCGGGGCTGCGGGGGGTGGAGGCGGCGGTGGTGGAGGAGGTGGAGTAGGGGGTCCCAGTCCCGAGCAGGAGGAAGGAGCCGGGTATAACAGTGAGGATGAGTATGAGAATGCTTCCAGACTACAGTCAGAGGACCCAGCGACTGTTGAACAGCAGGAACACTGGTTTGAAAAAGCACTCCAGGAAAAGAAAGGATTTGTCATcaaaaaaatgaaggaagatgGTGCCTGCCTCTTCAGAGCTGTTGCTGATCAAGTTTACGGAGACCAGGATATGCACGAAGTCGTTCGCAAGCACTGCATGGATTACTTGATGAAAAATGCAGATTACTTCTCAAACTATGTGACAGAGGACTTCACTACATACATCAACAGAAAGAGGAAGAACAACTGTCATGGCAACCACATTGAGATGCAGGCAATGGCAGAGATGTACAATCGGCCAGTTGAAGTTTATCAGTCCGGCACAGAACCAATCAACACGTTCCATGGCATCCATCAAAATAATGACGAGCCAATCAGAGTTAGTTACCATCGAAATATTCACTATAACTCTGTAGTGAATCCCAACAAAGCCACTATTGGAGTTGGGCTCGGACTTCCTGCCTTCAAACCCGGGTTCGCAGATCAGTCACTCATGAAGAATGCCATCAAAACGTCAGAGGAATCCTGGATTGAGCAACAGATGCTGGAGGATAAGAAGAGGGCCACAGATTGGGAAGCCACCAATGAGGCTATAGAAGAGCAAGTGGCCAGAGAATCGTATTTACAGTGGCTTCGAGATCAGGAGAAACAGGCACGACAGCCTCGTAAGGCCAGTGCTACGTGCAGCTCTGCCACGGCTGCGGCCTCCAGTGGTTTGGAAGAATGGAATGCTCGATCTCCACGGCAACGAAGCTCCGCCCCTTCTCCGGAGATTCCTGATCCCGCACACTCGGACACAGCGGCCAAACCCCCGTCCCCCGCCGGAGCCCTCGCTCTGTCCAAACCTCCGTCGCCCTGCGCACCAGGTCCCAGTAACCAGGCTTGCGTTGGACCAGACAGACCCACCTCGTCTTCTCTGGTGTCTCTGTATCCAGCACTCGGCTATCGGGCCATTATGCAAGAGATGTCCCCTACTGCATTTGGCCTCACAGACTGGGAAGACGATGAGATACTGGCGTCGGTCTTGGCCGTGTCACAACAGGAATACCTCGATAGCATGAAGAAAAACGCCATGCATAGAGAACCTTCTCCAGACAGCAGTTGATAATGGAGGCTCGAGGCACAGTCTGCGCCCGAAGCAGGAGGCAGAAACACGGGGATCAAACCAATCACATTCTCTCCATCATCATGCAGGTCACACTGTCCTCCCTCtcctttatccatccattcatccatctgtccatcactGGCCTCCGCCATCCAGCTGTAATGGCCCATTGTCGTGATACTCGCCTAACCACTCCTTTTCTTTCTTACTCCATTCACGCCATCATCGGACTTCTTTAGGTGCATGTGAAAACCAACATGACTGATATCATTATAGAATACAGCGGGAAAACGAAAAGTTATTGAAAAAAGTCATACTTTATCCTCTTAATAATTGATTAATATaatcttgttttattttcttgtttgggatgaaaatgctctttttttcttggaataaaaaaaaagaactttctGAAGAAA
>TCONS_00069570
CGAGACGCTATCTGCGGCCTGCATTGGTGGAAGTGAGCTGATCAAGTTTACGGAGACCAGGATATGCACGAAGTCGTTCGCAAGCACTGCATGGATTACTTGATGAAAAATGCAGATTACTTCTCAAACTATGTGACAGAGGACTTCACTACATACATCAACAGAAAGAGGAAGAACAACTGTCATGGCAACCACATTGAGATGCAGGCAATGGCAGAGATGTACAATCGGCCAGTTGAAGTTTATCAGTCCGGCACAGAACCAATCAACACGTTCCATGGCATCCATCAAAATAATGACGAGCCAATCAGAGTTAGTTACCATCGAAATATTCACTATAACTCTGTAGTGAATCCCAACAAAGCCACTATTGGAGTTGGGCTCGGACTTCCTGCCTTCAAACCCGGGTTCGCAGATCAGTCACTCATGAAGAATGCCATCAAAACGTCAGAGGAATCCTGGATTGAGCAACAGATGCTGGAGGATAAGAAGAGGGCCACAGATTGGGAAGCCACCAATGAGGCTATAGAAGAGCAAGTGGCCAGAGAATCGTATTTACAGTGGCTTCGAGATCAGGAGAAACAGGCACGACAGCCTCGTAAGGCCAGTGCTACGTGCAGCTCTGCCACGGCTGCGGCCTCCAGTGGTTTGGAAGAATGGAATGCTCGATCTCCACGGCAACGAAGCTCCGCCCCTTCTCCGGAGATTCCTGATCCCGCACACTCGGACACAGCGGCCAAACCCCCGTCCCCCGCCGGAGCCCTCGCTCTGTCCAAACCTCCGTCGCCCTGCGCACCAGGTCCCAGTAACCAGGCTTGCGTTGGACCAGACAGACCCACCTCGTCTTCTCTGGTGTCTCTGTATCCAGCACTCGGCTATCGGGCCATTATGCAAGAGATGTCCCCTACTGCATT

Function

symbol description
otud5a Predicted to enable Lys63-specific deubiquitinase activity and thiol-dependent deubiquitinase. Predicted to be involved in protein K48-linked deubiquitination; protein K63-linked deubiquitination; and response to lipopolysaccharide. Predicted to act upstream of or within proteolysis. Orthologous to human OTUD5 (OTU deubiquitinase 5).

GO:

id name namespace
GO:0070536 protein K63-linked deubiquitination biological_process
GO:0071108 protein K48-linked deubiquitination biological_process
GO:0016579 protein deubiquitination biological_process
GO:0006508 proteolysis biological_process
GO:0032496 response to lipopolysaccharide biological_process
GO:0005575 cellular_component cellular_component
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function
GO:0061578 Lys63-specific deubiquitinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-61 Predicted to enable Lys63-specific deubiquitinase activity and thiol-dependent deubiquitinase. Predicted to be involved in protein K48-linked deubiquitination; protein K63-linked deubiquitination; and response to lipopolysaccharide. Predicted to act upstream of or within proteolysis. Orthologous to human OTUD5 (OTU deubiquitinase 5).

Ensembl:

ensembl_id ENSDARG00000059006

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00069569 False 2312 mRNA 0.53 9 8860902 8922631
TCONS_00069570 True 914 mRNA 0.52 7 8893535 8921499

Neighbor

gene id symbol gene type direction distance location
XLOC_035448 si:ch211-180f4.1 coding upstream 12736 8845932 ~ 8848166 (+)
XLOC_035447 elk1 coding upstream 116004 8712446 ~ 8744898 (+)
XLOC_035446 uxt coding upstream 156472 8699085 ~ 8704430 (+)
XLOC_035445 usp11 coding upstream 177969 8643901 ~ 8682933 (+)
XLOC_035444 grm6a coding upstream 236894 8532407 ~ 8624008 (+)
XLOC_035450 pim2 coding downstream 5239 8927870 ~ 8934069 (+)
XLOC_035451 si:dkey-83k24.5 coding downstream 14281 8936912 ~ 8942456 (+)
XLOC_035452 slc35a2 coding downstream 24992 8947623 ~ 8957679 (+)
XLOC_035453 bcap31 coding downstream 50794 8973425 ~ 9029175 (+)
XLOC_035454 BX284664.1 coding downstream 188441 9111072 ~ 9111190 (+)
XLOC_035442 CU928118.1 non-coding upstream 539306 8321482 ~ 8321596 (+)
XLOC_035435 NA non-coding upstream 1011108 7824772 ~ 7849794 (+)
XLOC_035432 CR385024.1 non-coding upstream 1208932 7644265 ~ 7651970 (+)
XLOC_035431 NA non-coding upstream 1264808 7587459 ~ 7596094 (+)
XLOC_035425 CU862015.1 non-coding upstream 1767019 7086916 ~ 7093883 (+)
XLOC_035458 NA non-coding downstream 872237 9794868 ~ 9796429 (+)
XLOC_035459 NA non-coding downstream 932107 9854738 ~ 9860610 (+)
XLOC_035461 CT573497.1 non-coding downstream 971041 9893672 ~ 9893788 (+)
XLOC_035463 CU928205.1 non-coding downstream 1145641 10068272 ~ 10074129 (+)

Expression


Co-expression Network