Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00069570 |
| length | 914 |
| RNA type | mRNA |
| GC content | 0.52 |
| exon number | 7 |
| gene id | XLOC_035449 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007119.7 |
| NCBI id | CM002892.2 |
| chromosome length | 54304671 |
| location | 8860902 ~ 8922631 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0070536 | protein K63-linked deubiquitination | biological_process |
| GO:0071108 | protein K48-linked deubiquitination | biological_process |
| GO:0016579 | protein deubiquitination | biological_process |
| GO:0006508 | proteolysis | biological_process |
| GO:0032496 | response to lipopolysaccharide | biological_process |
| GO:0005575 | cellular_component | cellular_component |
| GO:0004843 | thiol-dependent ubiquitin-specific protease activity | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0008233 | peptidase activity | molecular_function |
| GO:0008234 | cysteine-type peptidase activity | molecular_function |
| GO:0061578 | Lys63-specific deubiquitinase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030616-61 | Predicted to enable Lys63-specific deubiquitinase activity and thiol-dependent deubiquitinase. Predicted to be involved in protein K48-linked deubiquitination; protein K63-linked deubiquitination; and response to lipopolysaccharide. Predicted to act upstream of or within proteolysis. Orthologous to human OTUD5 (OTU deubiquitinase 5). |
| ensembl_id | ENSDART00000139150 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00069567 | lncRNA | upstream | 155512 | 8735474 ~ 8738023 (+) | True | XLOC_035447 |
| TCONS_00069550 | lncRNA | upstream | 648434 | 8244248 ~ 8245101 (+) | True | XLOC_035440 |
| TCONS_00069538 | lncRNA | upstream | 1045248 | 7845573 ~ 7848287 (+) | True | XLOC_035435 |
| TCONS_00069537 | lncRNA | upstream | 1045293 | 7828425 ~ 7848242 (+) | False | XLOC_035435 |
| TCONS_00069536 | lncRNA | upstream | 1052642 | 7828414 ~ 7840893 (+) | False | XLOC_035435 |
| TCONS_00069572 | lncRNA | downstream | 6391 | 8927890 ~ 8929793 (+) | True | XLOC_035450 |
| TCONS_00069574 | lncRNA | downstream | 16224 | 8937723 ~ 8942456 (+) | False | XLOC_035451 |
| TCONS_00072141 | lncRNA | downstream | 18296 | 8939795 ~ 8942456 (+) | True | XLOC_035451 |
| TCONS_00069577 | lncRNA | downstream | 51938 | 8973437 ~ 8976378 (+) | True | XLOC_035453 |
| TCONS_00069583 | lncRNA | downstream | 777628 | 9699127 ~ 9721538 (+) | False | XLOC_035457 |
| TCONS_00069568 | mRNA | upstream | 45369 | 8845932 ~ 8848166 (+) | True | XLOC_035448 |
| TCONS_00069565 | mRNA | upstream | 148637 | 8726958 ~ 8744898 (+) | False | XLOC_035447 |
| TCONS_00069566 | mRNA | upstream | 148637 | 8735285 ~ 8744898 (+) | False | XLOC_035447 |
| TCONS_00069564 | mRNA | upstream | 163616 | 8712446 ~ 8729919 (+) | False | XLOC_035447 |
| TCONS_00069562 | mRNA | upstream | 189105 | 8699085 ~ 8704430 (+) | False | XLOC_035446 |
| TCONS_00069571 | mRNA | downstream | 6371 | 8927870 ~ 8934069 (+) | False | XLOC_035450 |
| TCONS_00069573 | mRNA | downstream | 15413 | 8936912 ~ 8941029 (+) | False | XLOC_035451 |
| TCONS_00069575 | mRNA | downstream | 26124 | 8947623 ~ 8957679 (+) | True | XLOC_035452 |
| TCONS_00069576 | mRNA | downstream | 51926 | 8973425 ~ 9029175 (+) | False | XLOC_035453 |
| TCONS_00069579 | mRNA | downstream | 227937 | 9149436 ~ 9167115 (+) | True | XLOC_035455 |
| TCONS_00069563 | other | upstream | 189105 | 8699105 ~ 8704430 (+) | True | XLOC_035446 |
| TCONS_00069553 | other | upstream | 571939 | 8321482 ~ 8321596 (+) | True | XLOC_035442 |
| TCONS_00069525 | other | upstream | 1565211 | 7320321 ~ 7328324 (+) | False | XLOC_035428 |
| TCONS_00069522 | other | upstream | 1577329 | 7315769 ~ 7316206 (+) | False | XLOC_035429 |
| TCONS_00069511 | other | upstream | 1847599 | 7033058 ~ 7045936 (+) | False | XLOC_035424 |
| TCONS_00069578 | other | downstream | 189573 | 9111072 ~ 9111190 (+) | True | XLOC_035454 |
| TCONS_00069587 | other | downstream | 972173 | 9893672 ~ 9893788 (+) | True | XLOC_035461 |
| TCONS_00069600 | other | downstream | 1922453 | 10843952 ~ 10844068 (+) | True | XLOC_035474 |
| TCONS_00069612 | other | downstream | 2765758 | 11687257 ~ 11715282 (+) | False | XLOC_035484 |
| TCONS_00069614 | other | downstream | 2938529 | 11860028 ~ 11860144 (+) | True | XLOC_035486 |
