RNA id: TCONS_00069538


Basic Information

Item Value
RNA id TCONS_00069538
length 830
lncRNA type retained_intron
GC content 0.43
exon number 2
gene id XLOC_035435
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 7824772 ~ 7849794 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctactatgtttaaaaatatgttgaacaaaaaattctctctgttaaaaaaaacagttggGAAATATTTTTCGAACAATTAAAATTTCAcgctaataattttcacttcaactTTTCTTACCATCTCCAGCCACTCTCTGAATCTGAGTCGCATCGCCGTTGAAACTCTTCTGGCTCTGGGAGGTGGAGGACATTTGTTTTCTGGGAGGTTGTTTGTGTCCGTTGCATTTTGCATGTGGGTTGCATTTCTGTTGTGCTGCAGGACGAGATGTCGAAACTTGTGGTGAAGAAGCAGGAGGTGAACAGGTCACAGCGCACCCATTGACTACTGGAGAAGTGCCATTGGGAAGACAGGGCTTCACTGAAAGGTTTGCCGGTGGCCTTTGGTTGTGTTGTGTGAACAGGACTGTCCTGCCCTCCGTCCTGCTGTTGGACATCCATGGCTTCTGTCTCCATTTGAGACGCTTGACTCGAACTCTGAAAACACATCCAGCAAGAGCTCATATGCATGAAATCAGCCTGGCTGTTTGTGGGGTAGAGGTCATAATGAAAACCTCTAACATGGTGACTTTTATCCTCTAAAACTCCATGAGAAAGAAAATCTGACTTAAAGTGCGCAAAACATGCTCGTCTGCTGCTAGGAACTGGCCTGAAGTGGTTTGGGAAGTTGACTAATATGACTAACATCCTGCTGAGTCAAACCAAATTGACAATATCATCAAAGCCCAGGAGTCATAATAAACATTTTAGATAGTTGTTTGCTGTTTTAAGGATCTGCCCGTGTCTTACCTGTAGGGTTTTATTGTTCTGTCTCCAGTTAAAAGCTTGTCCCC

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0006364 rRNA processing biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:1990234 transferase complex cellular_component
GO:1902494 catalytic complex cellular_component
GO:0080008 Cul4-RING E3 ubiquitin ligase complex cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000166118

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00069536 lncRNA upstream 4680 7828414 ~ 7840893 (+) False XLOC_035435
TCONS_00069529 lncRNA upstream 193603 7646745 ~ 7651970 (+) True XLOC_035432
TCONS_00069528 lncRNA upstream 198276 7644265 ~ 7647297 (+) False XLOC_035432
TCONS_00072135 lncRNA upstream 249479 7587459 ~ 7596094 (+) True XLOC_035431
TCONS_00071908 lncRNA upstream 528340 7316776 ~ 7317233 (+) True XLOC_035429
TCONS_00069550 lncRNA downstream 395961 8244248 ~ 8245101 (+) True XLOC_035440
TCONS_00069567 lncRNA downstream 887187 8735474 ~ 8738023 (+) True XLOC_035447
TCONS_00069572 lncRNA downstream 1079603 8927890 ~ 8929793 (+) True XLOC_035450
TCONS_00069574 lncRNA downstream 1089436 8937723 ~ 8942456 (+) False XLOC_035451
TCONS_00072141 lncRNA downstream 1091508 8939795 ~ 8942456 (+) True XLOC_035451
TCONS_00069534 mRNA upstream 36122 7778770 ~ 7809451 (+) False XLOC_035434
TCONS_00069535 mRNA upstream 36342 7801060 ~ 7809231 (+) True XLOC_035434
TCONS_00069531 mRNA upstream 73254 7740004 ~ 7772319 (+) False XLOC_035433
TCONS_00069532 mRNA upstream 73254 7740010 ~ 7772319 (+) False XLOC_035433
TCONS_00069533 mRNA upstream 73254 7756893 ~ 7772319 (+) True XLOC_035433
TCONS_00069539 mRNA downstream 5843 7854130 ~ 7873041 (+) True XLOC_035436
TCONS_00069540 mRNA downstream 26823 7875110 ~ 7892396 (+) False XLOC_035437
TCONS_00069541 mRNA downstream 26852 7875139 ~ 7881506 (+) False XLOC_035437
TCONS_00069542 mRNA downstream 26855 7875142 ~ 7912936 (+) True XLOC_035437
TCONS_00069543 mRNA downstream 127458 7975745 ~ 8034978 (+) False XLOC_035438
TCONS_00069525 other upstream 517249 7320321 ~ 7328324 (+) False XLOC_035428
TCONS_00069522 other upstream 529367 7315769 ~ 7316206 (+) False XLOC_035429
TCONS_00069511 other upstream 799637 7033058 ~ 7045936 (+) False XLOC_035424
TCONS_00069506 other upstream 1067126 6778332 ~ 6778447 (+) True XLOC_035418
TCONS_00069502 other upstream 1646144 6199315 ~ 6199429 (+) True XLOC_035414
TCONS_00069553 other downstream 473195 8321482 ~ 8321596 (+) True XLOC_035442
TCONS_00069563 other downstream 850818 8699105 ~ 8704430 (+) True XLOC_035446
TCONS_00069578 other downstream 1262785 9111072 ~ 9111190 (+) True XLOC_035454
TCONS_00069587 other downstream 2045385 9893672 ~ 9893788 (+) True XLOC_035461
TCONS_00069600 other downstream 2995665 10843952 ~ 10844068 (+) True XLOC_035474

Expression Profile

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