RNA id: TCONS_00069580


Basic Information

Item Value
RNA id TCONS_00069580
length 1778
RNA type mRNA
GC content 0.47
exon number 5
gene id XLOC_035456
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 9684479 ~ 9700640 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCAGTCTACAAATATGTTTGTCATTCTGTTTGGTCTGATAGGACCGAGCTTTAAATGACTTTCCATTCtacataaacatttatatatatatatatatatatagtaaaaagtgTGTATAAAAGACTTACGCTGAACTCGGAGGATATGAGCTGGTCTCCGCTTCTGTCATGGTTGGACAAACAGTTGACCCGCTTTACAAAGCTCAACAGGCATCATGTGATTCCTTATTCCAGCTCGAGTAATGGAGGGCCACAGAGATCCATTGTGTGACATCAGTAGCAGCACCCTTAAACAACACACCAAATGCAGACACACAGAAGATTCTCACTTTGAGGGGAAATGAGAAATTCACAACATGCACAGGAATAGAGGAAGCTGGGGGTTTCAGCCTGAGGACACCTTGATAGAGGACTCTGGTGAGTTTCCATCAAGCCTGGAGCTCAATGGGCAGAAGACTGAGCTGTTGGCTGGTTGCGCTATGGATGTTCCAGGTCTGTCCCACCGGAATGAAGATGTAACGTCTGAAAGCTGGAGGAAACACAGAAAGCATGTGTTTGTGCTGAGCGATGCAGGGAAGCCCATTTACTCCCGCTATGGTAATGAAGAGGCCCTTTCCTCCACCATGGGTGTGATGATGGCGCTGGTCTCCTTCGTTCAGGCTGGAGGAAACACCATCCAATCAATATTTTCAGATGAGCACACGGTGGTGTTTTTACAGCAGGGCCCTCTGGTGTTTGTTTCTGTCTCCACAACTCATCAATCAGAGCAGCAGCTGCGCGGTGAACTCCTCCATGTCTATCATCAGATAGTCAGCATGCTTACACAGGCCAGCATAAAACGCATCTTTGAGCACCGCAAGAACTATGACCTGCGGCGCCTGCTGTTTGGCTCTGAGAGGGTCCTGGACAGCCTTCTGGACGTCATGGACTTTGATCCCAGCTTCATGTTATCAGCAGTCCAGTGTTTACCCCTGCCGTCTTCTTCAAGAGACATCCTCAGTAACATCCTACAGAAATCCATCACCCCCAATCTGGTATTCTCCTTTCTCATTGCACAAAACCGGCTTGTGTCCATCGTTCAGGAGAAGACAGTCGCGGAGGACACTAGACTAAAACCCAGTGACCTTCATCTTCTCTTAAACCTCATCAGGGCATCTTCTGCTTTTCAGGCCGGAGAGATTTGGATGCCCATCTGCCTGCCCCTGTTCAATCATGACTGCTACTTTTATGCCTACGTGGCGAATCTAGACCCTCCTGAATGCACCATATGCCTTGTGCTTCTTTCAACAGATAAAGAAGCTTTTTATGCCATGGCAGAGTGCAAACGGAAAATCGAGCAAGCTTTCATGTCTCAGAATGCCTTGGAGTGTGTGGCAAACAGTCAGATGTACTGTGTTGAGGATGTCGGTGTAAATAATCTCAGACACTTTTTGTACAAGCCTTCAAATGTGATGGAACATCATCGCCAGCTCCCACAGTTTACATGCCCAGAGATGGCCGTGCCCTACAAAAGCCAGGAAGAGAGGATACGACTGCTGGATCTGTATCGCAACATGCACAATCGTATCCACAGTACATCACGGCCTCTCAAGCTCATCTACCATTCTGCAGACGGAGAAACTCTGCTGGCTTGGGTCACAGGCAAGTTTGAGATGTATGCTTGTTTTACATCACTTGTCACAAAGAAATCAGCAATCAGTGAATTGACAAAATTGCTGCGGTGGATCAAAAAGGAAGAGGATCGTCTCTTTATTTGTCACCTTCCAAAATACTCCACT

Function

GO:

id name namespace
GO:0006623 protein targeting to vacuole biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-318 Predicted to act upstream of or within protein targeting to vacuole and vesicle-mediated transport. Orthologous to human MON1B (MON1 homolog B, secretory trafficking associated).

Ensembl:

ensembl_id ENSDART00000132031

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00069577 lncRNA upstream 708101 8973437 ~ 8976378 (+) True XLOC_035453
TCONS_00069574 lncRNA upstream 742023 8937723 ~ 8942456 (+) False XLOC_035451
TCONS_00072141 lncRNA upstream 742023 8939795 ~ 8942456 (+) True XLOC_035451
TCONS_00069572 lncRNA upstream 754686 8927890 ~ 8929793 (+) True XLOC_035450
TCONS_00069567 lncRNA upstream 946456 8735474 ~ 8738023 (+) True XLOC_035447
TCONS_00069583 lncRNA downstream 3559 9699127 ~ 9721538 (+) False XLOC_035457
TCONS_00072142 lncRNA downstream 99300 9794868 ~ 9796429 (+) True XLOC_035458
TCONS_00072143 lncRNA downstream 159170 9854738 ~ 9860610 (+) True XLOC_035459
TCONS_00069589 lncRNA downstream 372704 10068272 ~ 10074129 (+) False XLOC_035463
TCONS_00072144 lncRNA downstream 372711 10068279 ~ 10070370 (+) True XLOC_035463
TCONS_00069579 mRNA upstream 517364 9149436 ~ 9167115 (+) True XLOC_035455
TCONS_00069576 mRNA upstream 655304 8973425 ~ 9029175 (+) False XLOC_035453
TCONS_00069575 mRNA upstream 726800 8947623 ~ 8957679 (+) True XLOC_035452
TCONS_00069573 mRNA upstream 743450 8936912 ~ 8941029 (+) False XLOC_035451
TCONS_00069571 mRNA upstream 750410 8927870 ~ 8934069 (+) False XLOC_035450
TCONS_00069582 mRNA downstream 3543 9699111 ~ 9792270 (+) False XLOC_035457
TCONS_00069584 mRNA downstream 19442 9715010 ~ 9733211 (+) True XLOC_035457
TCONS_00069585 mRNA downstream 170783 9866351 ~ 9986978 (+) False XLOC_035460
TCONS_00069586 mRNA downstream 172296 9867864 ~ 9986978 (+) True XLOC_035460
TCONS_00069588 mRNA downstream 306237 10001805 ~ 10013552 (+) True XLOC_035462
TCONS_00069578 other upstream 573289 9111072 ~ 9111190 (+) True XLOC_035454
TCONS_00069563 other upstream 980049 8699105 ~ 8704430 (+) True XLOC_035446
TCONS_00069553 other upstream 1362883 8321482 ~ 8321596 (+) True XLOC_035442
TCONS_00069525 other upstream 2356155 7320321 ~ 7328324 (+) False XLOC_035428
TCONS_00069522 other upstream 2368273 7315769 ~ 7316206 (+) False XLOC_035429
TCONS_00069587 other downstream 198104 9893672 ~ 9893788 (+) True XLOC_035461
TCONS_00069600 other downstream 1148384 10843952 ~ 10844068 (+) True XLOC_035474
TCONS_00069612 other downstream 1991689 11687257 ~ 11715282 (+) False XLOC_035484
TCONS_00069614 other downstream 2164460 11860028 ~ 11860144 (+) True XLOC_035486
TCONS_00069632 other downstream 3447597 13143165 ~ 13153578 (+) True XLOC_035494

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000010_08341936_08349855.mRNA True 2108 mRNA 0.43 4 CI01000010 8341359 ~ 8349880 (-)