G1645180


Basic Information

Item Value
gene id G1645180
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 60114788 ~ 60123112 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1882030
TCTCAATGTCTTACAACCTGCACTGTGCAAGACAGCACTGAACCCACCTGTTAAATCCAGCACAAAGTTGTTTCTCTGCAAAAGAGAACATAAAAACAATAGTTCTTCAGACACAAATCATAAATTGCCAATCTGATTCAAGAAAATGTCAATTGCACAGCTAGCATCAACTTACCATTGACCAATGTTTCTTTGCACTATATGGGGGGGAAATAATATTGTTACCAGTGTGAAattaaatgagaaaacaaaagagatgCTTTGGCTTTCTGAACAATGCTCCAATGCAGATACCAGATGCATGACCTTTCCCATATCGTAAACAAAAGGTCTATTTGAAATAAGCTCCCACTCAGAGAGTACTTACCACAATTAAAGCTGGAGGCCTTGAGCAACCTTTGAGGGGGATAATTTAAATAAGGTCAGTCAATCAACGGGAAGATTTGGGAGCATATGAGTTAGCAAAATAACACAATGCCTTTTTGGAGATGTTTTAAATGTTCTATAAATGCTGGGTTCAGATGATACAGTGTCTGTTGTTGAAAAATAGCAGTTTATCACATACGTTGGAATGTCTTCATCAGTGCATCCAAGCTTGCCTTTACACCCTGTGAGAGGTGAGGCGGAAGAGATTCCAAACTTTGGTCGAGACCCGTAAATCTGAGAGAAAAAGGAAAGAGACATTAGTACAGTCTTTTGTCAATCTGTACTTTACGAGGCAGTCCCTTGTACGTTTGTTTGGGGTAAAGTAGTCTCTTACATGGCATTGTAGGATTCACAGGTGATGTTTAGG

Function

NR:

description
uncharacterized protein LOC110511042, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1882030 True 793 lncRNA 0.39 2 60114788 60123112

Neighbor

gene id symbol gene type direction distance location
LOC110498222 LOC106603387 coding upstream 92172 59996525 ~ 60022616 (+)
LOC110510484 LOC106607199 coding upstream 153071 59865592 ~ 59961717 (+)
ankef1b LOC106609265 coding upstream 274932 59814601 ~ 59839856 (+)
LOC110498234 LOC106607246 coding upstream 315201 59773968 ~ 59799587 (+)
LOC110498214 LOC106607310 coding upstream 354073 59739558 ~ 59760715 (+)
LOC110498212 rp1l1 coding downstream 188347 60311459 ~ 60330337 (+)
fndc4b LOC106604723 coding downstream 234936 60358048 ~ 60375297 (+)
LOC110498402 LOC106604468 coding downstream 259871 60382983 ~ 60392450 (+)
plaat1l LOC106611413 coding downstream 275748 60398860 ~ 60402461 (+)
LOC118941500 NA coding downstream 279347 60402459 ~ 60405097 (+)
G1645171 LOC106606422 non-coding upstream 28768 60075467 ~ 60086020 (+)
G1645172 NA non-coding upstream 31980 60078165 ~ 60082808 (+)
G1645066 NA non-coding upstream 53724 60060468 ~ 60061064 (+)
G1645050 NA non-coding upstream 84782 60029768 ~ 60030006 (+)
G1645046 NA non-coding upstream 87682 60026889 ~ 60027106 (+)
G1645189 NA non-coding downstream 57 60123169 ~ 60152853 (+)
G1645217 NA non-coding downstream 52322 60175434 ~ 60183993 (+)
G1645263 NA non-coding downstream 130994 60254106 ~ 60254945 (+)
G1645282 NA non-coding downstream 155503 60278615 ~ 60278849 (+)
G1645283 cssa01h8orf74 non-coding downstream 157441 60280553 ~ 60283213 (+)
G1644651 NA other upstream 366443 59747984 ~ 59748345 (+)
G1644569 NA other upstream 505394 59608600 ~ 59609394 (+)
G1644280 NA other upstream 917775 59196684 ~ 59197013 (+)
G1644123 NA other upstream 1057565 59054523 ~ 59057223 (+)
LOC110498189 klhdc1 other upstream 1816553 58293310 ~ 58298259 (+)
chrna2a LOC103467111 other downstream 350011 60462967 ~ 60475546 (+)
LOC110498236 LOC106603790 other downstream 418924 60541955 ~ 60546243 (+)
G1645443 NA other downstream 592821 60715933 ~ 60718611 (+)

Expression


Co-expression Network