XLOC_036063


Basic Information

Item Value
gene id XLOC_036063
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 53018176 ~ 53019480 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072312
ctcatgaaaGCATTCAAATATGAACACAGacacacacgttgggTTTTCATCTTTCATACACTCTCCCCACAGCTGACCTTTAGACTGTAAACACTGTATATTCCCTCGCCCTGCCCcaaaactcaaccctcacaggaCACACTCTGCACTTTACATTCTCAGAATACTTCATTCAGATTTAGGGGACATtatcctcatggggaccaaacaaatgttaaaatgtactctcattgggtttcccccacagtccaaacacatgcgctataggggaattgatgaactaaagtggccatagtttatgagtgtgtgtgaatgagtgtgtttgcgtgttttccagtactgggttgcagctggaagggtatccgctgtgtaaaacatatgctggaatagctggcggttcattccgctgtggcgacctctgataaataagggacttagacaaggtaaattgaataaatttattACTCTCATTGCTAatgacatttggtccccacaacatgAACaccaggaccacacacacacacacaccaccaccaccaccagccgtTAAACCCCATTCCTCGTAGCTGAAACCAGGTGCAAAAACCCAACACTTGAAGTCAGATTGAAGTCAGTTTCTGAACTCTCTTCATGAACAAAGCTACGCCTGCATGAGTAGAGaaaatacatcataaatatatatgtttgggTTTTGACACCTTCCTGCTAAACGGTTCCTGGAATAATGGAAATGTACTCAAGGGCGAGTAAACCATGGctgaattttaattttagggtgaactatccctttaagagcagcCATAATCTCGATCATATATCTGTAACCGCTCAGCCCAAAACATACTGTGCTACACAGTAAAGAAATGCCGGGTTCCACACAAGTCCgtcatgttctcccaatgttttacaaatttaagtagattgaacaaaacaataaagaaattaGGAACTTTTGTTGGTACAGCTCACTTTAAAGTAGTTTGAGCGAGCAGCAAAAGTCACGAGTGTCATTTAAAAAGTAACGACACctcatgactagggccagacagaatctgcggacgttttttgctatttctgtggaaaattttggtaaaaatctg

Function

GO:

id name namespace
GO:0010604 positive regulation of macromolecule metabolic process biological_process
GO:0048731 system development biological_process
GO:0010628 positive regulation of gene expression biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0051173 positive regulation of nitrogen compound metabolic process biological_process
GO:0048522 positive regulation of cellular process biological_process
GO:0030182 neuron differentiation biological_process
GO:0009891 positive regulation of biosynthetic process biological_process
GO:0009893 positive regulation of metabolic process biological_process
GO:0031325 positive regulation of cellular metabolic process biological_process
GO:0031328 positive regulation of cellular biosynthetic process biological_process
GO:1902680 positive regulation of RNA biosynthetic process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051254 positive regulation of RNA metabolic process biological_process
GO:1903508 positive regulation of nucleic acid-templated transcription biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0048667 cell morphogenesis involved in neuron differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0045935 positive regulation of nucleobase-containing compound metabolic process biological_process
GO:0007414 axonal defasciculation biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0010557 positive regulation of macromolecule biosynthetic process biological_process
GO:0007423 sensory organ development biological_process
GO:0022008 neurogenesis biological_process
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072312 True 1100 lncRNA 0.42 2 53018176 53019480

Neighbor

gene id symbol gene type direction distance location
XLOC_036062 NA coding upstream 619 53017077 ~ 53017557 (+)
XLOC_036060 NA coding upstream 130493 52879425 ~ 52887683 (+)
XLOC_036059 adgrd2 coding upstream 191995 52788997 ~ 52826181 (+)
XLOC_036058 NA coding upstream 237539 52767455 ~ 52780637 (+)
XLOC_036057 bcl2l16 coding upstream 301860 52701811 ~ 52716316 (+)
XLOC_036064 dre-mir-181a-2 coding downstream 4059 53023539 ~ 53023617 (+)
XLOC_036065 dre-mir-181b-2 coding downstream 4199 53023679 ~ 53023764 (+)
XLOC_036066 nadka coding downstream 32221 53051701 ~ 53062017 (+)
XLOC_036067 nadka coding downstream 45440 53064920 ~ 53069540 (+)
XLOC_036068 wdr46 coding downstream 61035 53080515 ~ 53096754 (+)
XLOC_036056 NA non-coding upstream 365727 52651151 ~ 52652449 (+)
XLOC_036053 NA non-coding upstream 414110 52597388 ~ 52604066 (+)
XLOC_036070 NA non-coding downstream 123731 53143211 ~ 53152093 (+)
XLOC_036078 CU638702.1 non-coding downstream 476721 53496201 ~ 53498302 (+)
XLOC_036080 NA non-coding downstream 876606 53896086 ~ 53896991 (+)

Expression


Co-expression Network