ccdc96 (ccdc96)


Basic Information

Item Value
gene id ccdc96
gene name ccdc96
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 54966234 ~ 54968068 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578264.2
TTTCCAGGACAACTCAAAACACAAATGGTTTCATTAAAGAACAGTTGCTTATGTGTGAAGTTCTCGTTTAGGATTTCTTGACCTCGTTTTATCCTAGAAAACATATATTTGAATGTTGCCTTACAACCGGGGACTTAATTGACACGTGATTTTCTAGCTTGTTTTTAGCCAGAAATACTTAAACTTAAATTCCCGTTCTCATGGATGGGAATGCAGAGCAGAAAGAGAATGACCCTGGGTCCAATCCCAACATTGAAAACACAGAGCTGAAGAACGATGAGCAACTCCAGCATACACCAGCTGAAGAGCCCTCAGAAGAGGGCAAATCCACTAATGCTGATTACTGTAAGAATAAAGCTGACATGGCTGCAGATGAGGCCGAGGAGGTGGTAGCAGTGGAGCAGAGTGGGCAAGAGTCTGAAAAAGCTTTAGGGGAACAGGCAACAGAGGGTATCTCAgctgagacagagggagggaacccaGCCGCTTCTGAGCCAGGAGAGGGCGCTGGAGATGAGTCACCCACAGGACCCAACCTACCAACGAGTGAGACATTCGAAGAGGGAGAGGTCCCGGAGATGAAGCCTCTAATAGGGGAGCCTCTCTCCCGCGAGGGGAGCCTCACACTCGAAGATGTCGACAACAACAATGATGATGAAGACGGACTGCCAAAACTAGACCCAGGGACTCCCGAAGGGGAGAGTTCCGTGCAGGTTGAGGAAAAGGGTCCCTCTCTAACCAAAGAGACGGGCCCCAGCATCGACTACAAAGAGTACATGAACTTCCTTTATGAGTTGCAGGCGGAGAAGGACAAACTGAGCCAGGTCAACGGTCAGCTCCAGATCAAGCTGGTGGAGTACTTCCGCAAGAAGACAGGTGATGACGCACGTCCTGAGAAGGAGAAAGCCGTGTCAGACCAGGAGCAGCGCTACCAGAAGTACATGGCCATCATGGAGGACCTGAAGTGGCAGCACCGGCTGGACTCGGAGGCAGCCCAGCAGCAGGCAGAGGAGCTGAGGCAGCAGAGCCAGGAGAAGCTGGGCCAGCTGGAGACCGAGTGGAGCGCTTTCATGGCACTGAAGCGCGACGTGGCCGTGACGGCCCTGAGCCGGCGCCTTGGGAAACAGGCGGCGGCGGTCGAGGTAGAGCAGATCCAGGCGGCCGAGCAGCGGCGCCAGAAAGAGCTGGTCACCGTGCGCCTGGAGAATATCAAGCTGAAGAACAAGACGCGCAAGTTTGAGGCCACACTGCGTGCCAAGGAGATGCTCGCTGAGGGCCTGCACCTCATCGACTTCGAGCAGCTGAAGATAGAGAACCAGACGTATAATGAGAAGATAGAGGAGCGCAACGAGGAGCTCCTTAAACTGCGCAAGAAGATCACCAGCACAGTCCAGGTACTAACCCATGTGAAGGAGAAGCTCCAGTTCGTGCAGATGGAGAACCAGGCCAAGCGGGCCCAGTTGgctgaggtggaggtggtggtggccaGGAAGAGGGATGTGCTGACCAGGACCAAGCAGGCCAGGGATGGCCTCCGTATGGACAACCTGAAGCTGCGCCAGCGCTGCGGACTGCTGGGCAACGAGATCCTGCTGAGGGACTTTGAGGAGAAGGTTGACGCCTCAGACGACCTGGAGGAGAGGCTggaggggctgaagaggaggcaCGCAGAGCTCATACTGAAGTGTGCCGGGGTCAAGAAGAAACTGGAGTacaccaaaccctaacccaaaccctaacccaaaccctaaccctaacccaaaccctaatcctaacccagaccctaatcctaacccagaccctaatcctaacccagaccctaatcctaacccaga

Function

symbol description
ccdc96 Predicted to be involved in cilium assembly. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be active in axoneme and ciliary basal body. Orthologous to human CCDC96 (coiled-coil domain containing 96).

NR:

description
coiled-coil domain-containing protein 96

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578264.2 True 1835 mRNA 0.54 1 54966234 54968068

Neighbor

gene id symbol gene type direction distance location
LOC110500744 grpel1 coding upstream 6232 54955547 ~ 54960002 (+)
LOC110500891 afap1 coding upstream 457957 54349344 ~ 54508277 (+)
LOC110500735 ablim2 coding upstream 623653 54206483 ~ 54342581 (+)
si:dkey-219e21.4 LOC106608570 coding upstream 763332 54199722 ~ 54202902 (+)
LOC110500729 md2l1 coding upstream 895691 54067452 ~ 54070543 (+)
LOC110500741 LOC106595343 coding downstream 14724 54982792 ~ 54986995 (+)
smim20 NA coding downstream 163900 55131968 ~ 55133176 (+)
LOC110500752 NA coding downstream 174156 55142224 ~ 55148988 (+)
LOC110500894 rbpj coding downstream 202308 55170376 ~ 55268660 (+)
LOC110500895 LOC106577483 coding downstream 381847 55349915 ~ 55429706 (+)
G1753074 NA non-coding upstream 13053 54952931 ~ 54953181 (+)
G1753058 NA non-coding upstream 38208 54927746 ~ 54928026 (+)
G1753045 NA non-coding upstream 53083 54912895 ~ 54913151 (+)
G1753023 NA non-coding upstream 54260 54862839 ~ 54911974 (+)
G1752989 NA non-coding upstream 100034 54838289 ~ 54866200 (+)
G1753096 NA non-coding downstream 29888 54997956 ~ 55006936 (+)
G1753114 NA non-coding downstream 74817 55042885 ~ 55043313 (+)
G1753144 NA non-coding downstream 102863 55070931 ~ 55071130 (+)
G1753124 NA non-coding downstream 103489 55071557 ~ 55074587 (+)
G1753145 NA non-coding downstream 111225 55079293 ~ 55094050 (+)
LOC110500722 NA other upstream 1709633 53251413 ~ 53256660 (+)
G1751699 LOC106608599 other upstream 1993851 52962449 ~ 52972383 (+)
G1750050 NA other upstream 2769227 52191200 ~ 52197007 (+)
G1750030 LOC106608688 other upstream 2871129 52094709 ~ 52095105 (+)
G1753100 NA other downstream 33511 55001579 ~ 55011678 (+)
LOC110500754 LOC106591080 other downstream 622537 55590450 ~ 55592100 (+)
G1755158 NA other downstream 1418339 56386407 ~ 56387622 (+)
G1755570 NA other downstream 1825663 56793731 ~ 56794574 (+)
G1756789 NA other downstream 2958412 57926480 ~ 57928244 (+)

Expression


Co-expression Network