LOC118942978


Basic Information

Item Value
gene id LOC118942978
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 63528908 ~ 63534562 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038710.1
gttttcccaggtgtgctgtctagagtggtgttttcCAAGGTGTGTTTTCCCAAgtgtgctgtctagagtggtgttttcccaggtgtgctgtctagagtggAGTTTTCCAAGgtgtgttttcccaggtgtgctgtctagagtggtgttttcccaggtgtgctgtctagagtggtgttttcccaggtgtgttgTCTAGAGTGgagttttcccaggtgtgctgtctagag
>XR_005038711.1
gttttcccaggtgtgctgtctagagtggtgttttcCAAGGTGTGTTTTCCCAAgtgtgctgtctagagtggtgttttcccaggtgtgctgtctagagtggAGTTTTCCAAGgtgtgttttcccaggtgtgctgtctagagtggtgttttcccaggtgtgctgtctagagtggtgttttcccaggtgtgctgtctagagtggAGTTTTCCAAGgtgtgttttcccaggtgtgctgtctagagtggtgttttcccaggtgtgctgtctagagtggtgttttcccaggtgtgctgtctagagtggAGTTTTCCAAggtgtgttttcccaggtgtgttgTCTAGAGTGGAGTTTTCCAAtatgtgttttcccaggtgtgctgtctagagtggtgttttcccaggtgtgctgtctagagtggtgttttcccaggtgtgctgtctacAGTGGAGTTTTCCAAggtgtgttttcccaggtgtgctgtctagagtggtgttttcccaggtgtgttttcccaggtgtgctgtctaga
>TU2016914
cccaggtgtgctgtctagagtggtgttttcccaggtgtgctgtctagagtggtgttttcccaggtgtgctgtctagagtggAGTTTTCCAAggtgtgttttcccaggtgtgctgtctagagtggAGTTTTCCAAggtgtgttttcccaggtgtgctgtctagagtggtgttttcccaggtgtgctgtctagagtggtgttttcccaggtgtgctgtctacAGTGGAGTTTTCCAAggtgtgttttcccaggtgtgctgtctagagtggtgttttc
>TU2016915
tttcccaggtgtgctgtctagagtggtgttttcccagttgtgctgtctagagtggtgttttcccaggtgtgttgTCTAGAGTGgagttttcccaggtgtgttgTCTAGAGTGgagttttcccaggtgtgttgTCTAGAGTGGAGTTTTCCAAtatgtgttttcccaggtgtgctgtctagagtggtgttttcccaggtgtgttttcccaggtctgctgtctagagtggtgttttcccaggtgtgctgtctagagtggtgttttcccaggtgtgctgtctacAGTGGAGTTTTCCAAggtgtgttttcccaggtgt

Function

NR:

description
vegetative cell wall protein gp1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038710.1 False 227 mRNA 0.50 3 63531735 63532682
XR_005038711.1 False 528 mRNA 0.49 7 63531735 63534562
TU2016914 False 275 lncRNA 0.51 2 63528908 63531769
TU2016915 True 315 lncRNA 0.49 3 63529236 63534451

Neighbor

gene id symbol gene type direction distance location
si:ch73-265d7.2 NA coding upstream 159522 63363590 ~ 63372213 (+)
LOC110500814 LOC100194636 coding upstream 188121 63329511 ~ 63343614 (+)
pfn1 prof1 coding upstream 214214 63307806 ~ 63317521 (+)
LOC118942976 NA coding upstream 293428 63232777 ~ 63238307 (+)
LOC110500912 LOC105006398 coding upstream 308636 63162215 ~ 63223099 (+)
LOC110503296 LOC106592207 coding downstream 74109 63608671 ~ 63655491 (+)
zgc:158659 pik3ca coding downstream 129461 63664023 ~ 63813757 (+)
ctc1 LOC106595900 coding downstream 297993 63832555 ~ 63879982 (+)
tfr2 LOC106592655 coding downstream 358632 63893194 ~ 64066184 (+)
LOC110510008 LOC106562799 coding downstream 1013380 64547942 ~ 64579984 (+)
G1760910 NA non-coding upstream 12731 63518089 ~ 63519004 (+)
G1760906 NA non-coding upstream 28774 63502720 ~ 63502961 (+)
G1760902 NA non-coding upstream 34224 63496200 ~ 63497511 (+)
G1760887 NA non-coding upstream 66653 63464169 ~ 63465082 (+)
G1760886 NA non-coding upstream 67786 63463495 ~ 63463949 (+)
G1760946 NA non-coding downstream 19554 63554116 ~ 63555075 (+)
G1760947 NA non-coding downstream 20554 63555116 ~ 63555652 (+)
G1760955 NA non-coding downstream 28964 63563526 ~ 63564845 (+)
G1760957 NA non-coding downstream 36769 63571331 ~ 63575327 (+)
G1760968 NA non-coding downstream 62562 63597124 ~ 63597733 (+)
G1760865 NA other upstream 113476 63396272 ~ 63418259 (+)
G1760800 NA other upstream 315982 63210133 ~ 63215753 (+)
LOC110500813 tsc22d4 other upstream 503295 62991115 ~ 63050683 (+)
LOC110500953 LOC106594432 other upstream 642697 62873681 ~ 62903536 (+)
G1760941 NA other downstream 15343 63549905 ~ 63551492 (+)
G1761231 NA other downstream 882875 64417437 ~ 64418064 (+)
LOC110500801 LOC106608413 other downstream 1200146 64734656 ~ 64754522 (+)
LOC118942983 NA other downstream 1220067 64754608 ~ 64760958 (+)

Expression


Co-expression Network