G1758527 (stl1)


Basic Information

Item Value
gene id G1758527
gene name stl1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 59896429 ~ 59905640 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2013611
AGGGTTGTGTTCTCTAAAAAAAACACTGGTCTGAAAATGAGCCGGCTACACATTAACATTCAGTCACTAGTTTGCACGTTGATTTATGGATTGGTTTCTTATTAGTTGATTTTATCAGGGGTTCATCGTGTTTGATTATGGAGTAAATCCAGAGTAAAAAGGGCATCCAGTCGAAGAAGTTCGGTGGAGGCGGACAGGAAGTGGCAGCAGCCGAGCCAGGCCATCATTACACTGTAGGGGAGCCTCCCAGACAGGTGTAGGAAACCTCCAGGTATTTGTAGGTTCCATAGCAGGGGTCCCCGAAGACCGGATCAAGCCCCACAGTGCACTGACTCTTTCCCTCACACCTGCAGAGTTACACATTTATAACACAATTATAACACACAAGGGGGGATATTTGTAAACCAACTTTCAACACCACTGACATCCCCAAactagagaggagagatggggagatggatagAGAAAGTACCATTGTTTGACAACGTCCAGGGTTTTGGGTTGCAGACAGTTCTGGTTGCTGAGCTCGTGTCGTCCAGCAGAACAGGTAGAGCCGTCTCTACGGCCGTAGTTAGCATGAAACACCTTTATCACAcccttacctacacacacacacacacacaataattaaattgcacccttacctgctgaggGGGGTGTTAGGTGAGGGTGTTTGTGGGTGTAATCATGTGCTCACCACAGTCCAGGGAGCTGGTTGAGCCCTCGCAGGTGATACTTGTCTCTGAAaacacaacgcacacacacaacatcagCCCTGCTGTCGAGACACAGCATCAGCCCTGCTGTTGAGACAACATCAGCCCTGCTGCTCAGACACAACATCAGCCCTGCTGTTGAGATGATGGGGGATAAGAAAAAGGATgaagagcaagaaagagaggtgggaggagCAATCAAAGAGAGGTAGGAGGAGGAATGAAAGAGGTGGGAGGAGCAATCaaagagaggtgggaggaggaatGAAAGAGaggtgggaggagCAATCAAAGAGAGGTGGGAGGAGCAATCAAAGAGAGATGGGAAGGAAGGAGTGATTGTGACAACCCAGTATGGGGCTCCATTCATGAAAAAGTGTTGACTACTTTGTATCATGCACAAGCACATTTCCAATGACTAATTGTTCATTTGACACCCCTACACAGGTTGTTGTCCACTGTGCAAGTACAATACAGGTGTCAGAAGTGGAATGTCAGTGAACAACAACCTGTGCTTGGTATCAAGTGAACGACAAGCCCAttggacaggagagggagaataCTGACTAGCAGGAAGGCAGATGTAGGTGACGTCCAGATATTTGTAGGTTCCGACACAAGGGTCCGAGATTTGATTCACTCTCATGTTCACCTCACACGTCTGCTTCCCGTCACACctcTGTGACCAGAGTGCCAGAGTTCCTTCCTGGGAACACTTTGTGTTAGTCAGCTCACTCTGAGGTCGTCCCTGACTACAGGTCTGGCTGTCTATGCGTCCATAGAGTGCTTTCTGGAGAAAGACCACCCCATCTCCACATTCCAAATGCACCACACCATGACAGGTAGTCACCTTCTTGCTCTCCAGGCAGCCATAGGTAACGTCCAGGAAGATATTAGTCAGGTATGCAGAGTTACAGAGGTCACACACACTGCCGGAGGTCGCCACATCACACTTCTCATTTCCATCACACCTGTTAGACACACCGTTGAAGGCCTCTGTATCGGAGCAGGCTTTAGGTCTCTCGTTTGATGACAACTCAATAGTGCTGAATTTGACCCCATACACCATGATCACACCGTGATCACACTGGAGGCTGGGATCACCACACGTCAGGAACCTGCGCTGAATCTCTGACATTCCATAACccagaaagaggCTGGCCTGCAGCGCGGCGAACAAAATTGATTGTCCAAGGAGCATTCTGTCTACTTTATCAGGGATCTCTATAGGAGAGACAGCTTCTGAGTGTCTGACTGTATTGAATGGCTTTGCCCACGTAGTGAGATACGAATAACAGTTGAACGCGTGAGCTGTTACTGGAACACATTCCCTCTTTACTCTGTT

Function

symbol description
stl1 Enables solute:proton symporter activity. Involved in glycerol transport and transmembrane transport. Located in plasma membrane.

NR:

description
rhamnose binding lectin STL1 precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2013611 True 2061 lncRNA 0.48 13 59896429 59905640

Neighbor

gene id symbol gene type direction distance location
LOC110500791 LOC106608487 coding upstream 1843 59886153 ~ 59894586 (+)
trnay-gua-289 NA coding upstream 35975 59860368 ~ 59860454 (+)
trnay-gua-288 NA coding upstream 36651 59859692 ~ 59859778 (+)
trnay-gua-287 NA coding upstream 37327 59859016 ~ 59859102 (+)
trnay-gua-286 NA coding upstream 38004 59858339 ~ 59858425 (+)
LOC110500789 LOC106608496 coding downstream 130446 60036086 ~ 60055603 (+)
LOC110500904 NA coding downstream 164081 60005761 ~ 60123961 (+)
LOC118942813 LOC106608496 coding downstream 180400 60086040 ~ 60090150 (+)
LOC118942961 LOC106608493 coding downstream 184253 60089893 ~ 60110374 (+)
LOC110500788 LOC106608498 coding downstream 219375 60125015 ~ 60129635 (+)
G1758514 NA non-coding upstream 28831 59867005 ~ 59867598 (+)
G1758511 NA non-coding upstream 33444 59862781 ~ 59862985 (+)
G1758510 NA non-coding upstream 34250 59861743 ~ 59862179 (+)
trnay-gua-267 NA non-coding upstream 53812 59840144 ~ 59842617 (+)
trnay-gua-198 NA non-coding upstream 58031 59791219 ~ 59838398 (+)
G1758538 NA non-coding downstream 9955 59915595 ~ 59916018 (+)
G1758537 NA non-coding downstream 14438 59920078 ~ 59920409 (+)
G1758544 NA non-coding downstream 25566 59931206 ~ 59932237 (+)
G1758551 NA non-coding downstream 44340 59949980 ~ 59950224 (+)
G1758526 NA non-coding downstream 52183 59957823 ~ 59959115 (+)
G1757578 NA other upstream 1209906 58683137 ~ 58686523 (+)
rwdd rwdd4 other upstream 1486350 58405236 ~ 58411726 (+)
G1756789 NA other upstream 1968185 57926480 ~ 57928244 (+)
G1755570 NA other upstream 3101855 56793731 ~ 56794574 (+)
G1755158 NA other upstream 3508807 56386407 ~ 56387622 (+)
G1758801 NA other downstream 416575 60322215 ~ 60326620 (+)
G1758818 NA other downstream 446006 60351646 ~ 60353092 (+)
G1758786 NA other downstream 453190 60358349 ~ 60359351 (+)
G1759168 LOC101154678 other downstream 816518 60722158 ~ 60722472 (+)
G1759267 NA other downstream 904562 60810202 ~ 60810620 (+)

Expression


Co-expression Network