LOC110501572 (LOC106581856)


Basic Information

Item Value
gene id LOC110501572
gene name LOC106581856
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 19679303 ~ 19686002 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579235.2
ACCCGGAAGTACCTTTTTAGTGTTGCTGACGAGACGCTGATGAACCAAACCACAGCATCGCGACAGCACTGTGGAAATTATATGCCAAATCTGTAGTGTAACAAGGCCAAGGGTGCCATGGTTCTAGGAATGAAACTGGAAAGGGAAGACTGTGAGGACACCTCTTTGGGATGCTCATAACGTCGAGGTGTTGTATAGCTTCTGAGTAGCCTAGCTACATAGCTAGGAAACACAAGGACCATGCCTCTATCAGACTTCGTGGATGCCTTGAAGGACAACCCTTACTTTGGGGCTGGCTTTGGACTGGTGGGGGTGGGCTCGGCCATTGCTGTGGCCAGGAAATCAGCTCAATTTGGGATGATCTTCTTCCGGAGGAACTACATGATCACCCTGGAGGTGCCCAGTCGGGACAAGAGCTACCACTGGCTGCTGAGCTGGATCACCAAGCACGCCAAGCACACGCAGCACCTGAGTGTGGAGACCTCTTACATGCAGCACGAGAGTGGACGGGTACACACACAGTTTGACTTCCACCCCAGCCCTGGCAACCACATAATCTGGTATGGGAGGAAGTGGATCCGAgtggagaggaccagagagaaaCAGATGGTGGATCTCCACACAGGCACTCCCTGGGAGTCAGTCACGTTCACCGCCATGGGCAGAAACAGAGACGTCTTCTTCAACATCCTGCAAGAAGCCAGGGAGTTGGCCCTGAAGCAGGAGGAGGGTCGGACGGTGATGTACACGGCCCTGGGCTCCGAGTGGAGGCCCTTTGGGTTCCCACGGCGACGACGGCCCCTCAGCTCAGTGGTCCTGGAAGAGGGCTTGGCCGATAGGATTGTAGATGATGTGAAGGAGTTCATCGGAAACCCCAAGTGGTACACAGACCGAGGGATCCCCTACAGGAGAGGTTATCTGCTGTATGGACCTCCAGGCTGTGGGAAAAGCAGCTTCATcaCTGCGCTGGCTGGAGAGCTGGGCTACAGCATCTGCCTGATGAGTCTGAGCGACCGCAGCCTGTCTGACGACCGCCTCAACCACCTGCTGAGCGTGGCGCCGCAGCAGAGTATCATCCTGCTGGAGGACGTGGACGCCGCCTTCGTCAGCCGAGAGCTGCTGCCCACCGaaagCCCTCTGGCCTACCAGGGCATGGGCAGGCTGACCTTCAGTGGCCTCCTCAATGCTCTGGATGGAGTGGCCTCGTCAGAGGCCAGAATAGTCTTCATGACCACCAACTTCATAGACAGGTTGGACCCAGCTCTGATCAGGCCGGGCCGTGTGGACTTGAAACAATATGTGGGCCACTGCACCCACTGGCAGCTCACCCAGATGTTCCGACGCTTCTACCCAGCTGAGTCGGCCACAGAGGGGGACCGCTTTGCGGAGAGTGCGCTGGCCACCCACCCCAACATCAGTGCTGCCCAGGTGCAGGGGCACTTCATGCTGTTCAAAATAGACCCAACGGGCTCCATAGACAACGTGGCCAAGATGAAGGAGTGAGGAGACTTAAAGGACTCTGGGAAGGAAGGTCACAGAAGAAGTCGTCATTTGACACGAAATGAGAAGTTAAAGAGACTCTGTTTGAGACGGAAAATGCTGTAACTTCTCAAACTTTTTATGTGCTTTTTTCATTGCCAAGTCACATACTGAATAAAAGTGAGTGAGTAAATGATTTTAAATAAAATCAAAGGCACGTGAGTAAGTTGGTACTATTGACGTGGTATTTACAGTATATAGAGATTCAAAGTAAAAGGGTTGTGGCATGTATTACACTCTCCGAATTCTAAGAATTTTGATAATTCAAGGGAAATTCTGTCTGAGAAGCCATCCAGTTCACAGAACCACACTTCTATAACAAGTCTCAACTCCCTCCTACCGGGACACGCTGCTGTGCAAATCAAACACATTTCTCAAATCCACTCTGCATTTGATTGCAGATTGGCATAAGTCTACCTTCACCTAGGTAGCCTTTCTCATAGGTTGATTTGAGAAGTCTCTGTCACAATCTGTGTTTGGCAACTGCTTAAGTATTGACGTCCCTAGCTTATACAATGTTATTGATTTGAGGTTGGTTGGTACCTGTATTACTGAGTTTTGAGATTGGGAGAAAACTAAGTACTGCAATATTACAATATAATTACTGTAGAAACTAATCCAGTAATCATATAATGCAATATTGTACTAACAGTCATTGCTCGTAACTGACAAACTCTGAACAGGTCCAAGATGTAAAGTTATGCCCCTCTACTTCCTCTTTGTAAGAGTAAGCTCCACAGAAAGATACGTTGAGTAGAGATCAAATGTTAATACGTGTGAcgtttttttctgtattttttgctCTGTCTTATGCAACCTAGCTTACTTTATTTAGGAAGTGGAGGAggtctactatatatatatatatgtatatatatacagcagtttACATAGGTGTCACACTGTTTGGACAGAATGGAGATAGGGTCGCTTCTGTAAGTGTATGTGTCAATCATTTGGGTTTATCACTATTGTATTTTCTCCTTGATTTACAACATAATTGTATACTTTGGGAGTTTTATTTTAGATGAGTGGTTGTGTCATTTAATGACATTTCTTTGTGTTTTAGTACTAATTACTCTACATTCACCTACTCTGGATACAGTCAAGATgaaggatcccccccccccccagcaattACCCAGCGGGCTAAGCTGGTTGCCCAATGGGATGTTCTGTAGTAAAGTCAGATTCTCCATCCCTTCATATCTCCAGCTTATGgggcggggcggcaggtagcctagcggttagagagtgTGCCATCAACCGGAgggttgctagtttgaatcctGGTTCCGATGGGGTACTGATCGTGGCCGTTGATCTACTGCCGCTGCTTATCTGCCTACTAAAAATGGTCAGTCCGCATGGTCAGTCCGCTTGTTTCTTCTCACTTCAAGCTCGGATCTAATGTACTCTATGAATCATGTAAAGCTATGACTATGATGTAAATGTTAATTTTTTTTCTCAATTAGCCTCCCATGTAATCAATTATCACATTTAATTATTTAATAGATTAGTAATATTCTAAGGCAGGGGTGGGCAAATCTGATCCtggagtttttttccccccagatCAGCTATAACACGACTGATTAAACATGATTGTGGAA
>TU2044543
TATTACTGAGTTTTGAGATTGGGAGAAAACTAAGTACTGCAATATTACAATATAATTACTGTAGAAACTAATCCAGTAATCATATAATGCAATATTGTACTAACAGTCATTGCTCGTAACTGACAAACTCTGAACAGGTCCAAGATGTAAAGTTATGCCCCTCTACTTCCTCTTTGTAAGAGTAAGCTCCACAGAAAGATACGTTGAGTAGAGATCAAATGTTAATACGTGTGAcgtttttttctgtattttttgctCTGTCTTATGCAACCTAGCTTACTTTATTTAGGAAGTGGAGGAggtctactatatatatatatatgtatatatatacagcagtttACATAGGTGTCACACTGTTTGGACAGAATGGAGATAGGGTCGCTTCTGTAAGTGTATGTGTCAATCATTTGGGTTTATCACTATTGTATTTTCTCCTTGATTTACAACATAATTGTATACTTTGGGAGTTTTATTTTAGATGAGTGGTTGTGTCATTTAATGACATTTCTTTGTGTTTTAGTACTAATTACTCTACATTCACCTACTCTGGATACAGTCAAGATgaaggatcccccccccccccagcaattACCCAGCGGGCTAAGCTGGTTGCCCAATGGGATGTTCTGTAGTAAAGTCAGATTCTCCATCCCTTCATATCTCCAGCTTATGgggcggggcggcaggtagcctagcggttagagagtgTGCCATCAACCGGAgggttgctagtttgaatcctGGTTCCGATGGGGTACTGATCGTGGCCGTTGATCTACTGCCGCTGCTTATCTGCCTACTAAAAATGGTCAGTCCGCATGGTCAGTCCGCTTGTTTCTTCTCACTTCAAGCTCGGATCTAATGTACTCTATGAATCATGTAAAGCTATGACTATGATGTAAATGTTAATTTTTTTTCTCAATTAGCCTCCCATGTAATCAATTATCACATTTAATTATTTAATAGATTAGTAATATTCTAAGGCAGGGGTGGGCAAATCTGATCCtggagtttttttccccccagatCAGCTATAACACGACTGATTAAACATGATTGTGGAATACCTTGATCTATTCAATCGATAGTTAATTACTCAAAACAGTAGTGTAAGTGGGATGGACAGACTTCATACACTGCAGACCTTCCCAGCTTTAAGGAATCAACTGATCCATGACGCCATATTATGCATGGTTGTTAGTGCCCCCTGCATTTTCTAATAGCGAATATACTGGATTAAAGAGTAGAGGGATCATTACTGTCTTTCTAATGCTGTTCAATTATTCTACATGTTAGGTCAGACTAATCCACCACAT

Function

GO:

id name namespace
GO:0034551 mitochondrial respiratory chain complex III assembly biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579235.2 False 3152 mRNA 0.47 8 19679303 19685750
TU2044543 True 1319 lncRNA 0.39 1 19684684 19686002

Neighbor

gene id symbol gene type direction distance location
plcd4b plcd4 coding upstream 23545 19630160 ~ 19655758 (+)
LOC110501568 cnot9 coding upstream 51349 19603742 ~ 19627954 (+)
ybey ybey coding upstream 106357 19570580 ~ 19572946 (+)
LOC118943580 cssa21h2orf88 coding upstream 228181 19444418 ~ 19451122 (+)
pms1 pms1 coding upstream 264606 19350624 ~ 19414697 (+)
LOC110501573 LOC106586130 coding downstream 3266 19689016 ~ 19726868 (+)
zgc:66484 LOC106581857 coding downstream 48537 19734287 ~ 19743949 (+)
LOC110502116 NA coding downstream 186397 19872147 ~ 19872697 (+)
adarb1b LOC106581860 coding downstream 312089 19997839 ~ 20175660 (+)
traf3ip1 traf3ip1 coding downstream 520652 20206402 ~ 20259273 (+)
G1785961 NA non-coding upstream 5469 19673600 ~ 19673834 (+)
G1785953 NA non-coding upstream 13134 19665910 ~ 19666169 (+)
G1785952 NA non-coding upstream 13643 19665448 ~ 19665660 (+)
G1785951 NA non-coding upstream 14085 19665000 ~ 19665218 (+)
G1785945 znf142 non-coding upstream 16281 19662205 ~ 19663022 (+)
G1786002 NA non-coding downstream 79888 19765638 ~ 19765914 (+)
G1786006 NA non-coding downstream 82279 19768029 ~ 19768416 (+)
G1786007 NA non-coding downstream 82723 19768473 ~ 19768832 (+)
G1786167 NA non-coding downstream 310930 19996680 ~ 19997210 (+)
G1786280 NA non-coding downstream 498149 20183899 ~ 20184166 (+)
G1785947 znf142 other upstream 17377 19661109 ~ 19661926 (+)
LOC110501548 LOC106586143 other upstream 481589 19186076 ~ 19197714 (+)
G1784476 asic4 other upstream 912163 18766319 ~ 18767140 (+)
asb1 asb1 other downstream 595263 20269646 ~ 20281952 (+)
G1786330 NA other downstream 597431 20283181 ~ 20284571 (+)
G1787719 NA other downstream 1448515 21134265 ~ 21136477 (+)
G1788811 LOC106581691 other downstream 2309614 21995364 ~ 21996093 (+)
G1788815 LOC100136012 other downstream 2312723 21998473 ~ 21999623 (+)

Expression


Co-expression Network