LOC100136146 (LOC106582249)


Basic Information

Item Value
gene id LOC100136146
gene name LOC106582249
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 30976895 ~ 30995309 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579495.2
ATTCATTGTCGCTTGACTTCTGAGGGAGAGACAGTGCACTGCCTGCCTGTCAAGCAGTGAGAGCAGCAGACACACTGAAGGAAGGAAAgtgacacagacagactcacagacagATCCGCCAGTCAACTCACCTCCCTCAGATCCCACAAAATGGCTGCTCCACCACAGATTTCTCAAGATGAGTTGGAAGAACTGAGAGAAGCCTTTGCTAAGATCGATGTGGACTCTCATGGCCACATTGGCACAGAAGAGCTCAATGACCTGTTCAAAGCTGCCAACCTGCCATTGCCGGGATACAGAGTCAGAGAGATCATCCAGGATCTCACCAAGACAGGAGACCTGCATGACGGCAAAGTCACCTTCGGCGAGTTTGCTAATGTGGTCCATGGACTGAAGAGTACAGAAGTTGCTAAGACCTTCAAGAAAGCCATCAACAAGAAGGAGGGCATCTATGCCGTAGCAGGAACTTCAGAGCAGTCAGGCACACAGCACTCCTACTCAGaggaggagaaggtggcTTTTGTGAACTGGGTGAATAAGGCCTTGGAGAAAGACCCAGACTGCAAACATGTCCTCCCCATGGACCCCACCACTAATGACCTGTTCACCGCTGTCGGAGATGGGATCGTTTTATGTAAGATGATCAACCAGTCTGTTCCGGACACCATCGATGAAAGAACCATCAACAAGAAGAAGCTCACACCCTTCACCATCCAGGAGAATCTGAACCTGGCTCTGAACTCTGCGTCGGCCATTGGCTGCCACGTGGTGAACATCGGAGCAGAGGACCTGAAGGAAGGCAGACAGCATCTGGTCCTGGGCCTGCTCTGGCAAGTCATCAAGATCGGGTTGTTTGCTGACATCGAGATCAGCAGGaacgaagctctgATAGCCCTGCTGAGGGATGGGGAGAGCCTGGAAGACCTGATGAAGCTTTCCCCAGAGGAGCTGCTGCTGCGCTGGGCCAACTATCACCTAGAGGAGGCCGGCTGCTCCAAGATCAACAACTTCAGCTCTGACATAAAGGATTCCAAGGCCTACTACAACATCCTGAACCAAGTGGCCCctaagggagatgaggagggaatCCCTCCTATTGCCATTGACATTTCAGGGATAAGGGAGAAAGAGGACATAAAGAGAGCAGAGTGCATGTTGGAGCAGGCTGACCGTCTGGGCTGCCGGCAGTTCGTCACGGCAACCGACGTGGTCCGCGGCAACCCTAAGCTAAACTTAGCATACATTGCCAACCTGTTCAAcaagtaccctgccctgaagAAGCCTGAGAACCAGGACATCGACTGGAGCTCCATCGAGGGTGAAACCAGAGAGGAGCGCACCTTCAGGAACTGGATGAACTCACTGGGGGTCAACCCTCGTGTCAACCACCTCTATGTGGACATAGATGATGCTTTGGTCATCTTCCAGCTCTATGAGAAGATAAATGTGCCAGTGGATTGGGACAGAGTAAACAAACCCCCTTACTCCAAACTGGGCAGCAACATGAAGAAGTTGGAGAACTGTAACTATGCAGTGGAGCTGGGGAAGAAGGAGGCCAAGTTCTCCCTGGTTGGCATCGCTGGACAGGACCTGAATGAAGGCAACCGAAAACTCACCCAGGCCCTGCTGTGGCAGCTGATGAGGAGgTACACACTGAATATTCTGGAGGAGCTTGGTGATGGGCAGAAGGTGAATGACGACACCATCGTCACCTGGGTCAACGATACACTCACACAGGCTGGCAAAGGCACCATCTCTGGATTCAAGGATGGGTCCATTGTCACCAGTATGCCAGTCCTGGACCTGATTGATGCCATCCAGCCAGGCTCTATCCGCTATGATCTAATCAAAGTGGAGGACCTGACTGAGGAGGAGAAGCTCAATAACGCCAAGTATGCCATCTCCATGGCCAGGAAGATCGGAGCGCGGGTGTACGCCCTGCCTGAGGACCTAGTGGAGGTCAAACCTAAGATGGTGATGACGGTGTTCGCCTGCCTGATGGCCCGGGGCATGAAGAGGGTGTAGGGGTCACGACACCACAGAACACATCACCTGAAGCTGTTATCAGCACAACAACCAGAATCAGGGAAAAGAGGATACTAGCTCACAAGACAATTTCAATAATATAGCTAGTATGTCAGGAAATCAGGGATTCAAAACTCAGGCCTAATATAGCAAAGAGCAGATAAAAATAGATAATACTAGAAATATACCACAGATATCAGAAAGTCGAGCATCTTATTTTGATACGAGATTAAGCTCTTTCTAACTTTACTTTTTATTTCTTTAATTGATGCTATTAATGATATTGTTTTCAATTTTAATTAGAGACCATTTTGCTTTCAGACTGAAAATAAAGACATCAGGGaaaatta

Function

NR:

description
plastin-2

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K17276 LCP1, PLS2; plastin-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579495.2 True 2375 mRNA 0.50 16 30976895 30995309

Neighbor

gene id symbol gene type direction distance location
LOC110501741 nek5 coding upstream 16175 30948656 ~ 30960720 (+)
LOC110501739 LOC106582246 coding upstream 32964 30913631 ~ 30943931 (+)
LOC110502123 NA coding upstream 268444 30707128 ~ 30708451 (+)
LOC110501734 LOC106582244 coding upstream 281989 30591869 ~ 30694906 (+)
trnal-caa-107 NA coding upstream 396781 30580006 ~ 30580114 (+)
rl31 rl31 coding downstream 4376 30999685 ~ 31003643 (+)
LOC118943732 NA coding downstream 7176 31002485 ~ 31002621 (+)
LOC110501747 LOC106582251 coding downstream 41817 31037126 ~ 31039631 (+)
LOC110501749 LOC106582255 coding downstream 72184 31067493 ~ 31074290 (+)
LOC110501750 LOC106582256 coding downstream 93706 31089015 ~ 31187398 (+)
G1798447 NA non-coding upstream 416 30976032 ~ 30976479 (+)
G1798446 NA non-coding upstream 5047 30971611 ~ 30971848 (+)
G1798403 sucla2 non-coding upstream 75510 30900985 ~ 30901385 (+)
G1798195 NA non-coding upstream 544062 30432608 ~ 30432833 (+)
G1798194 NA non-coding upstream 544380 30428536 ~ 30432515 (+)
G1798473 NA non-coding downstream 36432 31031741 ~ 31031995 (+)
G1798474 NA non-coding downstream 37570 31032879 ~ 31033235 (+)
G1798475 NA non-coding downstream 38632 31033941 ~ 31034195 (+)
G1798489 NA non-coding downstream 47169 31042478 ~ 31042685 (+)
G1798490 NA non-coding downstream 47439 31042748 ~ 31042973 (+)
G1798397 NA other upstream 85828 30888661 ~ 30891067 (+)
G1798168 NA other upstream 430941 30500656 ~ 30545954 (+)
LOC118943632 LOC100194703 other upstream 1051513 29917773 ~ 29933035 (+)
G1797582 NA other upstream 1232041 29744192 ~ 29744854 (+)
LOC110501700 LOC106582186 other upstream 1966622 28997763 ~ 29010281 (+)
G1798579 NA other downstream 251172 31246481 ~ 31292205 (+)
G1798597 NA other downstream 298243 31293552 ~ 31297419 (+)
LOC110501767 LOC106582273 other downstream 1372327 32317123 ~ 32374208 (+)
G1800754 NA other downstream 1915484 32910793 ~ 32914182 (+)
LOC110501795 LOC106596205 other downstream 4745130 35740427 ~ 35760519 (+)

Expression


Co-expression Network