RNA id: XM_021579495.2


Basic Information

Item Value
RNA id XM_021579495.2
length 2375
RNA type mRNA
GC content 0.50
exon number 16
gene id LOC100136146
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 30976895 ~ 30995309 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTCATTGTCGCTTGACTTCTGAGGGAGAGACAGTGCACTGCCTGCCTGTCAAGCAGTGAGAGCAGCAGACACACTGAAGGAAGGAAAgtgacacagacagactcacagacagATCCGCCAGTCAACTCACCTCCCTCAGATCCCACAAAATGGCTGCTCCACCACAGATTTCTCAAGATGAGTTGGAAGAACTGAGAGAAGCCTTTGCTAAGATCGATGTGGACTCTCATGGCCACATTGGCACAGAAGAGCTCAATGACCTGTTCAAAGCTGCCAACCTGCCATTGCCGGGATACAGAGTCAGAGAGATCATCCAGGATCTCACCAAGACAGGAGACCTGCATGACGGCAAAGTCACCTTCGGCGAGTTTGCTAATGTGGTCCATGGACTGAAGAGTACAGAAGTTGCTAAGACCTTCAAGAAAGCCATCAACAAGAAGGAGGGCATCTATGCCGTAGCAGGAACTTCAGAGCAGTCAGGCACACAGCACTCCTACTCAGaggaggagaaggtggcTTTTGTGAACTGGGTGAATAAGGCCTTGGAGAAAGACCCAGACTGCAAACATGTCCTCCCCATGGACCCCACCACTAATGACCTGTTCACCGCTGTCGGAGATGGGATCGTTTTATGTAAGATGATCAACCAGTCTGTTCCGGACACCATCGATGAAAGAACCATCAACAAGAAGAAGCTCACACCCTTCACCATCCAGGAGAATCTGAACCTGGCTCTGAACTCTGCGTCGGCCATTGGCTGCCACGTGGTGAACATCGGAGCAGAGGACCTGAAGGAAGGCAGACAGCATCTGGTCCTGGGCCTGCTCTGGCAAGTCATCAAGATCGGGTTGTTTGCTGACATCGAGATCAGCAGGaacgaagctctgATAGCCCTGCTGAGGGATGGGGAGAGCCTGGAAGACCTGATGAAGCTTTCCCCAGAGGAGCTGCTGCTGCGCTGGGCCAACTATCACCTAGAGGAGGCCGGCTGCTCCAAGATCAACAACTTCAGCTCTGACATAAAGGATTCCAAGGCCTACTACAACATCCTGAACCAAGTGGCCCctaagggagatgaggagggaatCCCTCCTATTGCCATTGACATTTCAGGGATAAGGGAGAAAGAGGACATAAAGAGAGCAGAGTGCATGTTGGAGCAGGCTGACCGTCTGGGCTGCCGGCAGTTCGTCACGGCAACCGACGTGGTCCGCGGCAACCCTAAGCTAAACTTAGCATACATTGCCAACCTGTTCAAcaagtaccctgccctgaagAAGCCTGAGAACCAGGACATCGACTGGAGCTCCATCGAGGGTGAAACCAGAGAGGAGCGCACCTTCAGGAACTGGATGAACTCACTGGGGGTCAACCCTCGTGTCAACCACCTCTATGTGGACATAGATGATGCTTTGGTCATCTTCCAGCTCTATGAGAAGATAAATGTGCCAGTGGATTGGGACAGAGTAAACAAACCCCCTTACTCCAAACTGGGCAGCAACATGAAGAAGTTGGAGAACTGTAACTATGCAGTGGAGCTGGGGAAGAAGGAGGCCAAGTTCTCCCTGGTTGGCATCGCTGGACAGGACCTGAATGAAGGCAACCGAAAACTCACCCAGGCCCTGCTGTGGCAGCTGATGAGGAGgTACACACTGAATATTCTGGAGGAGCTTGGTGATGGGCAGAAGGTGAATGACGACACCATCGTCACCTGGGTCAACGATACACTCACACAGGCTGGCAAAGGCACCATCTCTGGATTCAAGGATGGGTCCATTGTCACCAGTATGCCAGTCCTGGACCTGATTGATGCCATCCAGCCAGGCTCTATCCGCTATGATCTAATCAAAGTGGAGGACCTGACTGAGGAGGAGAAGCTCAATAACGCCAAGTATGCCATCTCCATGGCCAGGAAGATCGGAGCGCGGGTGTACGCCCTGCCTGAGGACCTAGTGGAGGTCAAACCTAAGATGGTGATGACGGTGTTCGCCTGCCTGATGGCCCGGGGCATGAAGAGGGTGTAGGGGTCACGACACCACAGAACACATCACCTGAAGCTGTTATCAGCACAACAACCAGAATCAGGGAAAAGAGGATACTAGCTCACAAGACAATTTCAATAATATAGCTAGTATGTCAGGAAATCAGGGATTCAAAACTCAGGCCTAATATAGCAAAGAGCAGATAAAAATAGATAATACTAGAAATATACCACAGATATCAGAAAGTCGAGCATCTTATTTTGATACGAGATTAAGCTCTTTCTAACTTTACTTTTTATTTCTTTAATTGATGCTATTAATGATATTGTTTTCAATTTTAATTAGAGACCATTTTGCTTTCAGACTGAAAATAAAGACATCAGGGaaaatta

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K17276 LCP1, PLS2; plastin-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2058104 lncRNA upstream 416 30976032 ~ 30976479 (+) True G1798447
TU2058103 lncRNA upstream 5047 30971611 ~ 30971848 (+) True G1798446
TU2058056 lncRNA upstream 75510 30900985 ~ 30901385 (+) True G1798403
TU2057830 lncRNA upstream 544062 30432608 ~ 30432833 (+) True G1798195
TU2057829 lncRNA upstream 544380 30428536 ~ 30432515 (+) True G1798194
TU2058130 lncRNA downstream 36432 31031741 ~ 31031995 (+) True G1798473
TU2058131 lncRNA downstream 37570 31032879 ~ 31033235 (+) True G1798474
TU2058132 lncRNA downstream 38632 31033941 ~ 31034195 (+) True G1798475
TU2058155 lncRNA downstream 47169 31042478 ~ 31042685 (+) True G1798489
TU2058156 lncRNA downstream 47439 31042748 ~ 31042973 (+) True G1798490
XM_021579494.2 mRNA upstream 16175 30948656 ~ 30960720 (+) True LOC110501741
XM_021579492.2 mRNA upstream 32964 30913631 ~ 30943931 (+) True LOC110501739
XR_002470299.2 mRNA upstream 268444 30707128 ~ 30708451 (+) True LOC110502123
XM_021579485.2 mRNA upstream 281989 30591869 ~ 30694906 (+) False LOC110501734
XM_021579487.2 mRNA upstream 281989 30591869 ~ 30694906 (+) True LOC110501734
XM_021578581.2 mRNA downstream 4376 30999685 ~ 31003643 (+) False rl31
XM_021578580.2 mRNA downstream 4508 30999817 ~ 31003643 (+) False rl31
NM_001165047.2 mRNA downstream 4547 30999856 ~ 31003639 (+) True rl31
XR_005039050.1 mRNA downstream 7176 31002485 ~ 31002621 (+) True LOC118943732
XM_021579502.2 mRNA downstream 41817 31037126 ~ 31039631 (+) True LOC110501747
TU2058046 other upstream 85828 30888661 ~ 30891067 (+) False G1798397
TU2058047 other upstream 85828 30888661 ~ 30891067 (+) False G1798397
TU2058048 other upstream 85828 30888661 ~ 30891067 (+) False G1798397
TU2058049 other upstream 85828 30888661 ~ 30891067 (+) True G1798397
TU2057803 other upstream 430941 30500656 ~ 30545954 (+) True G1798168
TU2058247 other downstream 251172 31246481 ~ 31292205 (+) True G1798579
TU2058268 other downstream 298243 31293552 ~ 31297419 (+) True G1798597
TU2059894 other downstream 1372327 32367636 ~ 32374181 (+) True LOC110501767
TU2060607 other downstream 1915484 32910793 ~ 32914182 (+) True G1800754
TU2064746 other downstream 4745130 35740439 ~ 35759426 (+) False LOC110501795

Expression Profile