RNA id: XM_021579485.2


Basic Information

Item Value
RNA id XM_021579485.2
length 5170
RNA type mRNA
GC content 0.45
exon number 20
gene id LOC110501734
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 30591869 ~ 30694906 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCGCATGGGAGCGGAGGCAGTCAAAGAGGAAATTCGCGCACCGTTGAAGTCTCTCCCGTAGTTTGTGCCTGGATACAATCGTCGTAGCGCATTTAATTTGCAATAAAGGTGAGGCGAATATGGCGACGTTGGGACCAGACCCTCGTCCACATTCCCAGCTCGCGTCTACCTCTATACAAAGTAACATTAGCGGCAATAACGTGCCAACTAACCGTGGCTTGGAAAGAGCGTTGGAAGAAGGAGCGAACTCCGGGTTTTTTAACCTCAGCGCCAGGAAACTCAAAGAATTCCCTGGGACAGCATCTAACTTTGATTTATCAGATACAGTGGAAGCAGaCCTGTCAAGGAATCGTTTGGCAGAGGTCCCCTCGGAGGTGTGTCACCTGGTCGCCTTGGAATCGCTGAACCTATATCACAACTGTATCAAAACTATTCCTGACACCATCATCAACCTACAGTCACTCACCTCCTTAAACCTCAGTCGGAACCAGCTGTGTGCTCTGCCAGCCTGCCTGTGTGGGTTGCCCCTACGAGTCCTCAATGCCAGCAACAACAAGCTGGTGTGTATACCTGAGGCCATCGGTCAGCTCAGGAGCCTCATGGAGCTGGATGTGAGCTGTAATGAGATCACTGCTCTGCCCCGTCACATCGGCCGACTCAAGGCCCTCCGAGAACTCAACGTCCGCAGGAACCTGCTCTGTGTCCTTCCTGAAGACTTGGCGGAGCTTCCCCTGGTGAAATTGGACTTTTCCTGTAACAAGGTGTCTACCATCCCAGTGAGCTACAGGAAGATGGCCCAGCTCCAGAACCTACAGCTGGAGAACAACCCCCTACAGAGCCCCCCTGCACAGATCTGCATGAAAGGCAAAGTTCACATATTTAAGTACCTGAGCATTGAGGCATGTCGAAGTGACAAGATGCCTGATtctctctacctgcctgtcaTGGAGCGCCTCAGCCTATCACGACCCGCCACCGGCAGCACGGAGGACATTGACCAGAATAAGAAACAGGACACTGACTCAGGAGTTGGCAGCGACAACGGGGACAAGAGACTGTCTGCCACCGAGCCTTCAGATGAGGACAGCTTGAGTCTCAATGTCCCCATGTCCCACATCACAGAGGAGGAGGGGCTAAGCAAAGACGACTCCAGCGAACACATCAGCACTCTAacagCGGACCCCCACGGGGACGGGGTGCAACTGATAGAGGAAAGCCCAACAGAGGCCCTGAAAGACCTGAAGGAACAGTTAGGCTACAGAGACTCCTCTTCTGCTCTCAGCAACCGCTTCCGCAGCTACATCAAGGGACGGACGCCAGACTACGACGAGCCCCTCAGGATAGAGGAAGACACACACTGGGCCTCTGAACAGACGTCAAAGGTCACAGAAGGAACGCACATTGCCATGATCAACCAGCTGAAGGAGGCTGTAGAGCTACTACAAGACCCTAACAGaGTGAGTATGGAAACAGAGGACCTATCTGGAGTTCAGCTTTACCCTGTTGAGATGGTCATGGTGGAAGACTCTCTCAATGGCCAAGACAGTGACGGCAGTGAAGAACAAACCACACCCAAGTGGGACACTCCCGATGGAGGCTTTGAGTTCCAGAAGAAACGAGAGTTGATTCTAGAGAGGGCCAGGCTGGAGGCCCAGCTTGCATACCAACAATATGAGACACATATGTCCAACCAGGGAGAAGACAGAGTTCCAGGCAGCGGTACCACGTTTACcactcctcccacccctcccttCGGGTTGAAGCCCCGCTCGGcCCCTGCCTCACTGCCCTTCTCGCCCCAGCCCTGTCTCCGCCCCCTCCTCACACAGGCCCTGTCCGTCGATAAAGACACTCCCCCTAGACCAGGCGATGGAGTCATGCACACCAGTGTGTTCCTGAGGACCCATAAGAGTCTGGAGTCTGTGGATCCTCAGTTCACCATGAGGAGGAAGATGGAACAGCTGAGAGAAGAGCTGGAGCTGATGGAACAACTCAGAGAGAGTATAGAGAGCAGACTGAAGGTGGCTCTTCCTGAAGACCTGGGCTCCTCCCTCATGGACGGGGTGGTGCTCTGCCATCTGGCTAATCACATTCGCCCACGCTCCGTGGCCAGCATCCATGTGCCCTCGTCCGCTGTGCCCAAACTCAGCATGGCCAAGTGTCGGAGGAACGTGGAGAACTTCCTGGATGCCTGTAGGAAGATGGGCGTTCCCGAGGATaagctgtgtctgcctcatcacATACTAGAGGAGAAGGGTATGATAAAGGTGAGCATGACAGTCCAGGCGCTGGTGGATGAGACTTCAACCAAGCAGGCTCTCTTCACGTGAGAGGGAAGAAGACCAACACACCAACATAGACACACCACTTTGTCAAAGTGAACCAACACAAGTTGCCATTATGCCTTTTCCAAAGGACTGTAGCCTATATCAGTCTTCCTTTCGTGATTCTTACAACCAGGGTTTGAAGTTACACATTGATGCGTGGGGCACCCTGACATTCAAAGCTGACAGGGGTGTCCACATTGATGGTTTTTAATTCTTACGAGAGCATCCAGCAGCCTTGGACACTCCTGTAGCTTGAACCCTGCCTACAACAGCTTCTAGAATGCTGCACCGTGTATGACTATGCATTTCACCCCTCTATTCCTAAGGCCAGGTATATCACCCTCAGTATTGAGAATAAACACCAGACACTCCAATGTAGCGATCTCTCTGCTACAGCTTCCCTATTTCAAGATATTTACAATGAACATGACTGAGAGTATACATTGAAAATAATCCCCCAAATATTTCACTAATAGGTCATATATTTTAGGTTTAGTTctgtatattgtattatgttttacttttaaatggATCTCTCACCACCTCTGTAGGGGTTGAAGTATTGTCTTAACATTATGGGAACATTGTGTTTTGGTTGTTGAATCAGGAGTGGTTGTGGGTATGTAACTCAGGGTAGGTGTGGGCTTACTACACTGTCATGCTTCATTCTGTAGCCTGCTTCTCGGTCTATGGTATCACTCTaacattgtgtgtgtgcctgactgCATGCGTGCGTGTCAAAGAGAGTGACAGGAGTCATAGTTAGCCAGAATGAAAAAGGTTTGCATTCCCTAGTACATTGTATACTGCTAAATAACCTTGAAGCGTGGGGTGATGCTGACCATGCTAGGTGGTCATGTAGGACCTACAATGTTAGCATTTAAAAGTAACTGATACATTCACTGATTTAGAGACTGTTAGCAGTATCTGAAGAGTTGATGCTTGAGTACccaatatcccacaaaacagcAGAACACTCCAAAATAAGAATactaagtgtgtgtgagtgagcaatGGTGTTGGGTTTTGTATTGTACAGATATGCATTTTATACAGCTTGGTATCCAAAGCATAAGCTTTAGCAGTAAAAACAAACAATGTTTCACTGGATAGATTTGACAGTTGCCAAAACTAAACTGTTTTTTCAGAGCACTTGAGACAGCAGTtcattaaagctagaatccttaattgaaacaatgaCAGAGGCCACCCCGActttgttttggtaaaaagccgAGGGATGGGCCTGaataaatgtaaccactctcaaattcatagacagctaTGAATGCAAGgtctgaccatccatgatataaaaatgagttttaagcgtgttttgaggctatactgtgtttgtttacaaacattgggaGTAAAACAAGTTTTTATTCTGGGTTccgatggggtacgacagtttaACTAAGCTTGTGAGGCATTGGAGTTATTTTCAAGAATCAAAATGggtatatcattcatttataaatccaaaaatggatgtagcaactaatgATTCCAGCTTTAATGTTTTTGAATATGGTTTGTACTATTCCAATGATGTAAATGTCTTTAGACGTATGGTAAATGTTATGAAAAGCAGTGATGTGAAGTATCAATGTGGTGGTTCATGCAAGTGGGTTTTGTATTTAGAAAGTATTGTAGTAGTATATTTCTTACTTTATGGGgcaacccgaccaaattcacatagaaatgtgaggtATAGCTCTGTTATTCTCATTGAAAGGTAGATCTGTTCCATCTACACTATTTCTATGCATTCCGTTCTAATATCTctaacaccagcttcaaacagctgaaaatacaatcgTTCTGGaaaatatttcacagcggtttagaaagtacaatgattatctacactATACTGGCTTGTTTTTTCACAAACTGAAATTTGAAACCAGGAAATGGCGAAGCAATTTCTGCACAGTGAATATTTTAAGTCACCACCACACTCCTCAGGCAAAGTGAACATTCTCTTAGCAATGAAATCACTCCAGATCCTGATTCTAATGTAGAATTCAAAGTAACAACACTACTATTTATGTATATAATGTAACTAATATTTAATATAATTTACAATtactatatatataaaaaattataCACCGTAATCCTACTTTAATACTCAAAGTAATTTCCTTTCCACCAAGCTAAATAGAACTACTCAGGTGCTAACATTTGACTACCAGTATCCCTTCTCCCAGTTAACATTTCCTCCTATATTTTGATGATAGAAAATAATGTATAAACTAAAAGGGAAATATGACAAGGATATTTTCTTAGGAGAAAGTGACTGTAGCTTATCGTTTCCTTATGGAGGTTTGGGCCGTGTGCTGCAAACCTGGCAGTTTAGAAACCTACACATTTTCAATACTTTTAGTTCATTGATTAGTCTAGTCAATCCCTCGGGCCTTCAGGTGTGGCTGCCTACAGGCCTGAAATTATCTGCACTTTAAAGAGACTGTTTTGGCAACTGACAAATCTCAGAGCTCCATTTTAAATGTGTGACATTTATTTGAACTACACAAATGTGCTAAATGTTTTTACCAGTGTAACTATTGACTGCTGAGTTGAGCAGTTTTGCCCTTTTCTACCTTTCTGTTTATAGTCCTGAAAGCTTGTACTCAGTTTTGTACTTTGATTGGgaggaaatgttttttttaatgtttaggTTTCTTAAAATTGACGTACCATTTTGTACCTCTTGTCATATTGGTGTACAGCAATTTGGATTTTATTGCATGAAACACCCCTTTAATGTTGCCTTAACTGCTGTGAATAATGTATATATTTCATCACTATCAGTAAAGACCTTATCTGTAAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2057830 lncRNA upstream 159036 30432608 ~ 30432833 (+) True G1798195
TU2057829 lncRNA upstream 159354 30428536 ~ 30432515 (+) True G1798194
TU2057826 lncRNA upstream 167558 30424079 ~ 30424311 (+) True G1798191
TU2057773 lncRNA upstream 189171 30401673 ~ 30402698 (+) True G1798149
TU2057772 lncRNA upstream 191495 30399178 ~ 30400374 (+) True G1798148
TU2058056 lncRNA downstream 206079 30900985 ~ 30901385 (+) True G1798403
TU2058103 lncRNA downstream 276705 30971611 ~ 30971848 (+) True G1798446
TU2058104 lncRNA downstream 281126 30976032 ~ 30976479 (+) True G1798447
TU2058130 lncRNA downstream 336835 31031741 ~ 31031995 (+) True G1798473
TU2058131 lncRNA downstream 337973 31032879 ~ 31033235 (+) True G1798474
trnal-caa-107 mRNA upstream 11755 30580006 ~ 30580114 (+) True trnal-caa-107
trnal-caa-106 mRNA upstream 12265 30579496 ~ 30579604 (+) True trnal-caa-106
XM_021579479.2 mRNA upstream 16323 30552361 ~ 30575546 (+) True LOC110501731
XM_021579478.2 mRNA upstream 72826 30506284 ~ 30519043 (+) True LOC110501730
XM_021579481.2 mRNA upstream 104255 30470412 ~ 30487614 (+) True LOC110501732
XR_002470299.2 mRNA downstream 12222 30707128 ~ 30708451 (+) True LOC110502123
XM_021579492.2 mRNA downstream 218725 30913631 ~ 30943931 (+) True LOC110501739
XM_021579494.2 mRNA downstream 253750 30948656 ~ 30960720 (+) True LOC110501741
XM_021579495.2 mRNA downstream 281989 30976895 ~ 30995309 (+) True LOC100136146
XM_021578581.2 mRNA downstream 304779 30999685 ~ 31003643 (+) False rl31
TU2057803 other upstream 45915 30500656 ~ 30545954 (+) True G1798168
TU2057325 other upstream 666487 29923557 ~ 29925382 (+) True LOC118943632
TU2057150 other upstream 847015 29744192 ~ 29744854 (+) True G1797582
TU2055990 other upstream 1581596 29008624 ~ 29010273 (+) False LOC110501700
TU2058046 other downstream 193755 30888661 ~ 30891067 (+) False G1798397
TU2058047 other downstream 193755 30888661 ~ 30891067 (+) False G1798397
TU2058048 other downstream 193755 30888661 ~ 30891067 (+) False G1798397
TU2058049 other downstream 193755 30888661 ~ 30891067 (+) True G1798397
TU2058247 other downstream 551575 31246481 ~ 31292205 (+) True G1798579

Expression Profile