RNA id: XM_021578581.2



Basic Information


Item Value
RNA id XM_021578581.2
length 599
RNA type mRNA
GC content 0.44
exon number 5
gene id rl31
representative False

Chromosome Information


Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 30999685 ~ 31003643 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AACACTTTACAGATTACAGATGGCGCCAAACAAGAAAGGAGGTGAAAAAAAGAAGGGGCGTTCTGCCATCAACGAGGTTGTGACCAGGGAGTACACGGTCAACATCCACAAGCGCATACATGGCGTCTCCTTTAAGAGGAGGGCACCTCGCGCTCTCAAGGAGATACGAAAGTTCGCCATGAAGGAGATGGGAACCCCTGACGTGCGTATCGATACTCGCCTGAACAAGGCTGTGTGGACCAAGGGGGTGAGGAATGTCCCATACCGTATGCGTGTGCGCCTGTCAAGGAAGCGCAATGAAGATGAGGACTCTCCCAATAAACTGTATACCCTCGTCACATACGTTCCTGTCACGACATACAAAGGTCTGCAGACAGTCAATGTGGATGAGAACTAATTATTCATTGGTGTCGAAATACATTTATAAGACTGCAGTCTTGGATGATATACAAGTTTATACAATCACTAATTGGGATTCTTGATGGTGCAATTTATGCTTAcatagtttcaagttttattagttgtatgtacgggatacacatggtatacaccacgtccaatgaaatgcttacatgAAAATAAATTATTTCTAGAGCGTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2058104 lncRNA upstream 23206 30976032 ~ 30976479 (+) True G1798447
TU2058103 lncRNA upstream 27837 30971611 ~ 30971848 (+) True G1798446
TU2058056 lncRNA upstream 98300 30900985 ~ 30901385 (+) True G1798403
TU2057830 lncRNA upstream 566852 30432608 ~ 30432833 (+) True G1798195
TU2057829 lncRNA upstream 567170 30428536 ~ 30432515 (+) True G1798194
TU2058130 lncRNA downstream 28098 31031741 ~ 31031995 (+) True G1798473
TU2058131 lncRNA downstream 29236 31032879 ~ 31033235 (+) True G1798474
TU2058132 lncRNA downstream 30298 31033941 ~ 31034195 (+) True G1798475
TU2058155 lncRNA downstream 38835 31042478 ~ 31042685 (+) True G1798489
TU2058156 lncRNA downstream 39105 31042748 ~ 31042973 (+) True G1798490
XM_021579495.2 mRNA upstream 4376 30976895 ~ 30995309 (+) True LOC100136146
XM_021579494.2 mRNA upstream 38965 30948656 ~ 30960720 (+) True LOC110501741
XM_021579492.2 mRNA upstream 55754 30913631 ~ 30943931 (+) True LOC110501739
XR_002470299.2 mRNA upstream 291234 30707128 ~ 30708451 (+) True LOC110502123
XM_021579485.2 mRNA upstream 304779 30591869 ~ 30694906 (+) False LOC110501734
XM_021579502.2 mRNA downstream 33483 31037126 ~ 31039631 (+) True LOC110501747
XM_021579505.2 mRNA downstream 63850 31067493 ~ 31074290 (+) True LOC110501749
XM_036959108.1 mRNA downstream 85372 31089015 ~ 31187398 (+) False LOC110501750
XM_021579517.2 mRNA downstream 86617 31090260 ~ 31152487 (+) False LOC110501750
XM_021579506.2 mRNA downstream 86632 31090275 ~ 31187398 (+) False LOC110501750
TU2058046 other upstream 108618 30888661 ~ 30891067 (+) False G1798397
TU2058047 other upstream 108618 30888661 ~ 30891067 (+) False G1798397
TU2058048 other upstream 108618 30888661 ~ 30891067 (+) False G1798397
TU2058049 other upstream 108618 30888661 ~ 30891067 (+) True G1798397
TU2057803 other upstream 453731 30500656 ~ 30545954 (+) True G1798168
TU2058247 other downstream 242838 31246481 ~ 31292205 (+) True G1798579
TU2058268 other downstream 289909 31293552 ~ 31297419 (+) True G1798597
TU2059894 other downstream 1363993 32367636 ~ 32374181 (+) True LOC110501767
TU2060607 other downstream 1907150 32910793 ~ 32914182 (+) True G1800754
TU2064746 other downstream 4736796 35740439 ~ 35759426 (+) False LOC110501795

Expression Profile