RNA id: XM_021579505.2


Basic Information

Item Value
RNA id XM_021579505.2
length 3387
RNA type mRNA
GC content 0.51
exon number 10
gene id LOC110501749
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 31067493 ~ 31074290 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGCGCGGCGATGCATCTCTGAAATTGAATTCATCAATTGCTCTGCAAGATAGAGTACAGCGAGGACCAGATACTTGCCTTTTAATTGCATTTTTCCTAACAGTTAGAAGTTAATTTGGCTATTTAAACGGAGTAGGAAATTTGCAAACCACCGATGAAGGATTTGAGCTGCCAACAATGTTTTGCTAGCCAGCAATTACAGACCGCCTTCTTGCTGTATTTTGAGGAGGCGTAGCTAGCGAAGTTAACGTTATGTCACAGATTGGAGGTTTGGTTATGtcagccaactaacgttaggcaCATGGGAAATGGGCATTACGGTGCTGTAATATAGAATCTGTATATATAGGTTGACAAAATGGGAAGTCTTCATACGAGCTATTTTGACGTTAGTCACCAGCTCGGTGCATGTTCTATTCGGATCTCGCGGAATAAGGCCTACTAGTTCTTCTCTTGGAAAACAACACGGGTCTTTCACTATGGGACAGGTAAAAGAGTCTGACGTATTTTTCTGATGAGTAAGGAGTGTTTTTGTCCGAATAACAGTTAAGTTGTCAACACCGCTAGCTAGCTATACGTTTATAGTCCGAGACGAAAATGGAGACGGGAATCCAAGCCCACCAGTTTGTCCACGCGGTATCCAGCCCTAGAGCAGCGGGTATATCCACTGAAATGCTCGAGGTGGCAGCGGAAGCAACCCGGGCAGGTGACTACGACCTTGCCGCGGAAATCTATAGCTCTCAGCTGGTGGACCTCCAACATCCAGACCGGGGTATCTGTTTGCTCAAAGCTAACGCTCTTGCCCAGGCCGGGCGAATAGCGGAGGCGCTTGACTCGTACTGCACCGCGGCCAACATTAGCAAACTTCGGCCGGACGAATTGCAGCTTTTGGTTGTAAACATAGCACGGACTCTTCGCGAGAAGGAGCTAAACATTCATGGGAAGGCAACGAGTTGTCATAAAAGTGGGAATGGAGACGATCGTGTCGATGCCGATACAGAGGCATTTGAGGACGAACCCCTGGACTTGTTTTCGTGCCGCCTTTGTAGGTGTTTACTGTCAGAACCAACCACCATGGAGTGCGGCCATACGTTttgcaaacattgtttagaaaaaGAAACTGTCAAAGACTGCATACAATgcaaacataaactgaacaaagaCATACAGATCCTACCCATTGGGCTTAGAGTAAATGTCATCCTCAGTAGTTTGTTGGATAAATGGTTCGACTCTGAAAGTAAAGCCAGGAGGCATTGGATAGAAGGTGAGGTCTCACAGAAGAAGCACGACTACACAGATGCTTTGGAGAAGTACAACAAAGCCTTAGAACTGGCGCCATCTGTAGGTCGGCTACTGGGACAGCGTGCTGAGCTACACTTGGAGAGTAAGAACTACATCCAGGCCATCCAGGATGCAGAGAGCCTGTGTAGACTCAACCCTCTCTGGCCAAAGGCCCACTACATTAAGGCCTCAGCCCTGAGTAAAGCCAACCGTAACGATGAGGCCTTAAAGGAGTACTTCATGTGTGTGGCACTGAAACCTGATTGGACGATGGTGAAGCTGGAAGCCCAGAAGGTGCTTAGTGAGCTGTTCTCGTCAGTGTTTGAGAAGGATGGTCAGCCCACTCCCATACATCCTCTACAGGGTGGTCCCTCCACTCGCCTCCTTAAGCCCCCCGCCCTGTACGGCTCTCTAAACCCCTTCACCATGCCACAGAAGCCTGGCTGCTCCTCACAGGACTTAGAGTTCAGAGTGAGTAAGAGTTCTTTGTGCGATGGTCCCTCAGACTCCTCCAAACATCCCCTGTCCCCCAGCAGTGAAGCTGAGAAGCCCTTGCTAGAAGATGCCAAGAGCCTGGCCAGTGTCCTGGCTGCCCAGCCTGCCCCCCCAGGCAGCCTCAAGAGGAGACACAGTGGGGACGGCATAGCCTTCAGCCCTCCCTCCAAACTTTTCAGACCAGATGAAGcctgctcctcctctcaccttcctgCTGCTTACCTCTGGGGAAGGACGGTGTCCAAAGACCTGCTCGACAGTAGAGATATGGAGTGCTCCCTCTGTATGAGGCTGTTCTTTGAGCCTGTCTCCACCCCCTGTGGACACACCTTCTGCCTCAAGTGTCTAGAGCGCTGTCTGGACCACAACCCCAACTGCCCTCTCTGCAAAGAGAACCTCTCCGAGTATCTGGCCACAAGAGGGTTCAACAAGACCCTGCTGATGGAGGAAGTGCTGCAGCGTTACCTGGGAGATGAGCTGGCAGAGAGGAAGAAgatccacgaggaggagatgaaggAACTGGCAAACTTGAACCAGGAAGTGCCGATCTTTGTGTGCACCATGGCCTTCCCCACCATCCCCTGTCCACTGCACATCTTCGAACCACGCTACCGCCTCATGATCCGCCGCTCCATGGAGACCGGTACCAAACAGTTTGGTATGTGCATCGCTGATGAGTTGAAGGGTTTTGCTGATTACGGCTGCATGCTGGAGGTCCGGGACGTCAAGTTTTTTCCTGATGGGAGGTCTGTGGTCGACACCATCGGTGTGTCCCGCTTCAGAGTACTGAGCCACGGCCAGAGAGACGGATACAACACGGCAAAGATCGAGTACCTGGAGGATAAGAAGGTGGAGGGCCAGGAGTTTGTGGAGCTGCAGAAGCTTTATGTCTCTGTGTATGACCAGGCCAGCGGCTGGTTCATCTCCCTTAAAGACAACATGAAGAGCCAGATAATCAGCCACTTTGGACACCTACCCGGGAAGGACCCTGACCCACAGggTAATCCCAGTGGTCCAGCGTGGGCTTGGTGGCTGTTGGCAGTGCTGCCTCTTGACAACCGTGCCCAGCTCACCATCCTGGCCATGCCCTCCCTCAAGGACCGCCTCATTGCCATCCGCAGGGTCCTGATCTTCGTCACGCGCAAGAGACCCCGATGACCGCTCGGCCGCCACCACAACCGCGTAGACCATGCATGGTCATTCACTCATTCAGTAAACCCACTCAGCTTTCAAATGAGGGAAATGCCTTTGACTCCTTTACAAATGGCGCTCTCTGAATCTGAAGAAGCCATTGGGTTGGATTGTAGGGGGTGGGATAGGGAGGTCATTGTTTCTGGTTATCCATCCACCTATCAATGTCCAGTTCACCTGTCCTCTGTCACAATAACTCACTGAAATTATGGACTTCTGTCACGCTATCTCTCAACTTCTTATGTCCCCTCAAGGGAGGGAATAAGAGAGCACGGAATCAGACTGGTGACTGTCATGATGTGCCAGAACTGAACAGAACTGGGCCGACCAATTAACGGTGTTGCATCCACAATGTTGTGACTTGGTGTACAATTCTATTTAAGAAAAATAAAAAGACCTGACAAGTACCAAAAAAA

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0004176 ATP-dependent peptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2058156 lncRNA upstream 24520 31042748 ~ 31042973 (+) True G1798490
TU2058155 lncRNA upstream 24808 31042478 ~ 31042685 (+) True G1798489
TU2058132 lncRNA upstream 33298 31033941 ~ 31034195 (+) True G1798475
TU2058131 lncRNA upstream 34258 31032879 ~ 31033235 (+) True G1798474
TU2058130 lncRNA upstream 35498 31031741 ~ 31031995 (+) True G1798473
TU2058153 lncRNA downstream 98852 31173142 ~ 31173774 (+) True G1798487
TU2058216 lncRNA downstream 116147 31190437 ~ 31190737 (+) True G1798549
TU2058217 lncRNA downstream 116501 31190791 ~ 31191144 (+) True G1798550
TU2058218 lncRNA downstream 117529 31191819 ~ 31192287 (+) True G1798551
TU2058266 lncRNA downstream 209801 31284091 ~ 31289666 (+) True G1798596
XM_021579502.2 mRNA upstream 27862 31037126 ~ 31039631 (+) True LOC110501747
XM_021578581.2 mRNA upstream 63850 30999685 ~ 31003643 (+) False rl31
XM_021578580.2 mRNA upstream 63850 30999817 ~ 31003643 (+) False rl31
NM_001165047.2 mRNA upstream 63854 30999856 ~ 31003639 (+) True rl31
XR_005039050.1 mRNA upstream 64872 31002485 ~ 31002621 (+) True LOC118943732
XM_036959108.1 mRNA downstream 14725 31089015 ~ 31187398 (+) False LOC110501750
XM_021579517.2 mRNA downstream 15970 31090260 ~ 31152487 (+) False LOC110501750
XM_021579506.2 mRNA downstream 15985 31090275 ~ 31187398 (+) False LOC110501750
XM_021579508.2 mRNA downstream 15985 31090275 ~ 31187398 (+) False LOC110501750
XM_021579507.2 mRNA downstream 15986 31090276 ~ 31187398 (+) False LOC110501750
TU2058046 other upstream 176426 30888661 ~ 30891067 (+) False G1798397
TU2058047 other upstream 176426 30888661 ~ 30891067 (+) False G1798397
TU2058048 other upstream 176426 30888661 ~ 30891067 (+) False G1798397
TU2058049 other upstream 176426 30888661 ~ 30891067 (+) True G1798397
TU2057803 other upstream 521539 30500656 ~ 30545954 (+) True G1798168
TU2058247 other downstream 172191 31246481 ~ 31292205 (+) True G1798579
TU2058268 other downstream 219262 31293552 ~ 31297419 (+) True G1798597
TU2059894 other downstream 1293346 32367636 ~ 32374181 (+) True LOC110501767
TU2060607 other downstream 1836503 32910793 ~ 32914182 (+) True G1800754
TU2064746 other downstream 4666149 35740439 ~ 35759426 (+) False LOC110501795

Expression Profile