RNA id: XM_021579517.2



Basic Information


Item Value
RNA id XM_021579517.2
length 1038
RNA type mRNA
GC content 0.50
exon number 8
gene id LOC110501750
representative False

Chromosome Information


Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 31089015 ~ 31187398 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATCTGTCTCTCAGACACCGACTGATTCTGCTTCCCGTGTTGGTGAGGCTTTACAGTGGAGTGAGTGggagagcgagaacgagagataaagctcttaaattgaattgagagcgagagaggggtagGGCGGAGAATTGAGAGAAGCAAGCTCACTGCCAACTGTGGTAGCGCAATATGGAGTAATCGCGTCCGTTCGAGAACGACGGGAGTAGTTTACAAAGAAAACCCCGCTTTGGATCGACATTACATTAGCAAGGAATAAGATAACAATTTCAATTATGAGATTACGGCATTGCATATAGACAATTGACTTGAAGAGACTAAAATAGACGTTGCAATTTCTATGTATTATTGAAAAATGGCGAACGAGTCTCCAGCTAAAAGTCTAGTGGACATAGACCTTGCCTCTTTGCGGGACCCAGCTGGTATTTTCGAACTGGTGGAAGTGGTCGGCAATGGTACCTATGGACAAGTATACAAGGGCCGACATGTCAAGACAGGACAACTGGCGGCCATCAAGGTCATGGACGTCACAGAGgatgaagaggaggagattaAACTGGAGATTAATATGCTGAAGAAGTACTCCCACCACAGAAACATAGCCACCTACTACGGAGCCTTCATCAAGAAGAGCCCTCCAGGACACGACGACCAGCTATGGCTGGTGATGGAGTTCTGTGGTGCAGGCTCCATCACAGACCTTGTGAAGAACACCAAGGGCAACACACTGAAGGAGGACTGGATCGCCTACATCTCTCGTGAGATCCTCAGGggGTTGGCTCACCTGCACGCCCACCATGTGATCCACCGTGACATCAAGGGCCAGAACGTGCTGCTGACTGAGAACGCAGAGGTCAAACTAGTGGACTTCGGTGTGAGCGCCCAGCTGGACCGGACAGTGGGTAGGAGGAACACCTTCATTGGTACGCCCTATTGGATGGCGCCCGAGGTCATCGCCTGTGACGAGAACCCAGACGCCACCTATGACTACAGAGCTGATGGGACAGTACAGTAGCAGGTTGGGGCTGATGTTGTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2058156 lncRNA upstream 47287 31042748 ~ 31042973 (+) True G1798490
TU2058155 lncRNA upstream 47575 31042478 ~ 31042685 (+) True G1798489
TU2058132 lncRNA upstream 56065 31033941 ~ 31034195 (+) True G1798475
TU2058131 lncRNA upstream 57025 31032879 ~ 31033235 (+) True G1798474
TU2058130 lncRNA upstream 58265 31031741 ~ 31031995 (+) True G1798473
TU2058153 lncRNA downstream 20655 31173142 ~ 31173774 (+) True G1798487
TU2058216 lncRNA downstream 37950 31190437 ~ 31190737 (+) True G1798549
TU2058217 lncRNA downstream 38304 31190791 ~ 31191144 (+) True G1798550
TU2058218 lncRNA downstream 39332 31191819 ~ 31192287 (+) True G1798551
TU2058266 lncRNA downstream 131604 31284091 ~ 31289666 (+) True G1798596
XM_021579505.2 mRNA upstream 15970 31067493 ~ 31074290 (+) True LOC110501749
XM_021579502.2 mRNA upstream 50629 31037126 ~ 31039631 (+) True LOC110501747
XM_021578580.2 mRNA upstream 86617 30999817 ~ 31003643 (+) False rl31
XM_036959111.1 mRNA downstream 53901 31206388 ~ 31237363 (+) True LOC110502091
XM_021579518.2 mRNA downstream 97120 31249607 ~ 31267129 (+) False dnajc10
XM_021579520.2 mRNA downstream 97135 31249622 ~ 31267129 (+) False dnajc10
XM_021579519.2 mRNA downstream 97152 31249639 ~ 31267129 (+) True dnajc10
XM_036959603.1 mRNA downstream 212055 31364542 ~ 31366811 (+) True LOC110501756
TU2058046 other upstream 199193 30888661 ~ 30891067 (+) False G1798397
TU2058047 other upstream 199193 30888661 ~ 30891067 (+) False G1798397
TU2058048 other upstream 199193 30888661 ~ 30891067 (+) False G1798397
TU2058049 other upstream 199193 30888661 ~ 30891067 (+) True G1798397
TU2057803 other upstream 544306 30500656 ~ 30545954 (+) True G1798168
TU2058247 other downstream 93994 31246481 ~ 31292205 (+) True G1798579
TU2058268 other downstream 141065 31293552 ~ 31297419 (+) True G1798597
TU2059894 other downstream 1215149 32367636 ~ 32374181 (+) True LOC110501767
TU2060607 other downstream 1758306 32910793 ~ 32914182 (+) True G1800754
TU2064746 other downstream 4587952 35740439 ~ 35759426 (+) False LOC110501795

Expression Profile