RNA id: XM_036959111.1


Basic Information

Item Value
RNA id XM_036959111.1
length 2338
RNA type mRNA
GC content 0.50
exon number 11
gene id LOC110502091
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 31206388 ~ 31237363 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCAGGGCCCCTAAAAGGTGTGGGTATCATACATCTTCTGTCTCACTCCTGTACCTCTGTTTGGTTAGGACTGGATTCTCAAATCCAATGGGGGAAATATCCAGCTGAGGATTCACACCTCAATAAAACTACCCACAGCATTGTCTTGTCAACCTAAAGAGTTTAACTTAAAATCACACTTCAGCGAACCTGAAACCCCTCCGTGTGAAACGAAGTGAAGAGGAGCATCTTGGGTTTATAATCTCTAAGCTATGGATTGGAGTCAGAGGTTGCAGCTCTTGCTCTTCTCACTCCTCTGTCTCACTGGCAACTCCAAGGCAGTAGGAGAGCTCTGTGTGGACAAAGGACGAGAGACTGAGTGGGTCTTTTCAGTTTCCGGTGATGCTGCCATGTTGACATCCACCCTGTTGGACCTCAACATGTCTGACAACCACAGCATCCCCTATAACATCTCATGGTATTACCTAAGGACTGGGACAGAGCTGACCAGGGAGACAGGAAAGACTCTGGTGCAGGGGAAGACACTCTGGATTTTTAACATCACGATGGAAGATGCTGGAGACTATGAGTGTGTTGTGAGACAACCCTCCGAGTGCTACAAGAAGGTTGCCTTACTGATTGTGAACCACACCAACCCAAAAGAATGCGGTCGACCAGAAAAGGCCCAACATGTCCTGACCAACACAGCCACCTCTTTCCTGAACTGCCCATTGAGTGACCAAATCAGGGAAGTAGACAACTACTCCATCCAGTGGTACAAGGGCTGTGAACCCATTGTGGAAGATGATCCCTTGTGGCACAGGTTTAGTTATGTCAGTCACAGTACTATGGAGTTACTCCGAGTAGAAGTGGTCACCCTTGAGGATCATGCATTCTACACCTGCACCATGACCTTTAACTTGGAAGGGCTCAGCGGCAGGATCTCAGAGACCATCAACGGTACGGTGGACGTGGAGTATTGCCTGGAGCCCAAAGTGGTTGAACCTGCCAATGAGATCATCAAAGCAGATTTGGGTTCTTCCTTCAGTAAGATGTGTCGGGTGTTTGTCCCGAGTGTGGGGAATAAACATTGTGCAAATTTGAATTGGATTTCAAGAGAGAACTCAATTTCCAAAATTGTCTCAGAGCGCATCTTTCAGGAATCAGAAAGggagtggagagaagaggagggtgtaTGGTTGGAGCGTAATTTGAATTTCTTGACGGTGGAAGAGGAAGACTTTTCCATCCATTACACGTGTAAGGTTTCCAGCGACAGAGGCAGTCCTTCTGCCTCCTTCACACTACAGCCTACAGATCCAAACAACCTGTTCCCTATTGGGGTACTACTGACTAGTCTGGTATTGGTGTTTACTGTTAGTGTTGTTATTTACCATCGCTTTAAGATTGACATTGTGCTGTCGCTAAGGAGGGTGTTCCCGCTTCTCTACCCAAACACAGACTCTGATGGGAAGCTGTATGATGCGTACGTGGCGTACCCCCGTCTGTTTGGGGATGGGGGCAGGGCCTGTGGAGAGGCAGAGATGTTTGCCCTCCACACGTTGCCCCAGGTTCTGGAGGGGAGGTGTGGCTACAGGCTCTTCATACTGGGCCGGGACAGCCTACCAGGGGAAGccGTAGTAGATGCTGTGGAGGAGAGCATGCTGGCCAGCCGGTGTCTCCTCCTGGTCTACTCTGGCTCTACGTTCTGCAGTGACAGCAGCGGTGTCCTGGAGGCCTGGCAGATGTTCGAGAGGCAGACGGCCATGCACCATGCCCTGCTGGAGGGCTCCCTTAAGGTGGTCCTGGTGGAGCTGGAGGAGGTCACTCCTACACAGCTGGCCCTCTTCCCTGAGTCGGTGCGCCACCTCCGGGAGCGCCAGGGCGCCGTCTGCTGGTGGAAGAGTAGCAGGACAAGGAGGAACAAAGGGTTGAGGTGTGGGAGGTGGAGAAAAGAGGTGGcggagaagagaggggagcaggcttcgccccctctctcctcaccctctcttttCTTGTCCTCACGCTTCTGGAAGGAGTTGAGGTATTATATGCCAGTGAGGGGCATGAGGACGAGGTGCCCAGAGACGAACAGCCTGTTGAACTTGTGATGGGATTGATGGGCTTTGGAGAGGACAGTGTTAGACATAAGGAGGAAATATGTTGAATGAAAGGACTTCCATGGAGAGTATAATGTTGTTCCTGATGATTGATCCTGACGATTAATGTTGTAAAATGCACAGTTAAGAGTATTAATTCTGAACATATTGGCAGagccactcaaacacacacaccacacacacaatttaCCACTGTTGTACATACACACCACATCTGTGAGAGAGCTTTAATAAAGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2058218 lncRNA upstream 14101 31191819 ~ 31192287 (+) True G1798551
TU2058217 lncRNA upstream 15244 31190791 ~ 31191144 (+) True G1798550
TU2058216 lncRNA upstream 15651 31190437 ~ 31190737 (+) True G1798549
TU2058153 lncRNA upstream 32614 31173142 ~ 31173774 (+) True G1798487
TU2058156 lncRNA upstream 163415 31042748 ~ 31042973 (+) True G1798490
TU2058266 lncRNA downstream 46728 31284091 ~ 31289666 (+) True G1798596
TU2058271 lncRNA downstream 52632 31289995 ~ 31291207 (+) True G1798600
TU2058276 lncRNA downstream 61004 31298367 ~ 31299233 (+) True G1798604
TU2058288 lncRNA downstream 75729 31313092 ~ 31315028 (+) True G1798615
TU2058337 lncRNA downstream 140856 31378219 ~ 31415967 (+) True G1798661
XM_036959108.1 mRNA upstream 18990 31089015 ~ 31187398 (+) False LOC110501750
XM_021579506.2 mRNA upstream 18990 31090275 ~ 31187398 (+) False LOC110501750
XM_021579508.2 mRNA upstream 18990 31090275 ~ 31187398 (+) False LOC110501750
XM_021579507.2 mRNA upstream 18990 31090276 ~ 31187398 (+) False LOC110501750
XM_021579509.2 mRNA upstream 18990 31090276 ~ 31187398 (+) False LOC110501750
XM_021579518.2 mRNA downstream 12244 31249607 ~ 31267129 (+) False dnajc10
XM_021579520.2 mRNA downstream 12259 31249622 ~ 31267129 (+) False dnajc10
XM_021579519.2 mRNA downstream 12276 31249639 ~ 31267129 (+) True dnajc10
XM_036959603.1 mRNA downstream 127179 31364542 ~ 31366811 (+) True LOC110501756
XM_036959121.1 mRNA downstream 220648 31458011 ~ 31535521 (+) False pde1a
TU2058046 other upstream 315321 30888661 ~ 30891067 (+) False G1798397
TU2058047 other upstream 315321 30888661 ~ 30891067 (+) False G1798397
TU2058048 other upstream 315321 30888661 ~ 30891067 (+) False G1798397
TU2058049 other upstream 315321 30888661 ~ 30891067 (+) True G1798397
TU2057803 other upstream 660434 30500656 ~ 30545954 (+) True G1798168
TU2058247 other downstream 9118 31246481 ~ 31292205 (+) True G1798579
TU2058268 other downstream 56189 31293552 ~ 31297419 (+) True G1798597
TU2059894 other downstream 1130273 32367636 ~ 32374181 (+) True LOC110501767
TU2060607 other downstream 1673430 32910793 ~ 32914182 (+) True G1800754
TU2064746 other downstream 4503076 35740439 ~ 35759426 (+) False LOC110501795

Expression Profile