RNA id: TU2058266


Basic Information

Item Value
RNA id TU2058266
length 1434
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G1798596
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 31284091 ~ 31289666 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttttttttttttttttttttttTGCAAGACAGCTCATACAGCCATGGACTATGCGTTGGATATGACACCAGCCAGACAATGTTTAATAAAGCACTCAAATCAGATTTAAAATCACAATTGAGCTGGTTAGCATTTCATAGatttatatatgtatgtatgttgtGTACGAAGACAAACCAGAGTGATGTATATGAGAAGTATAAAACTACAGTTCAGTTTAGAAAAACCCGAAGCACCAAAAACGACCGGAAGAAAGACACTTAGCAAATCATCAGAGCTCCAAAGCATGAGACATATAAGAAAGCAATTCAAACATTtgttccagagagagagaaaaagagagagagagggagacatattACATGTAATGCAATCATTATTTCAATAGCTCAATGTTGTCGTGTTTTGTGTTGTCTTCAATGACATATACTCTGTCTTCTTGGATCAATCTGACCTTTCTTCGCATACTGACAAAAACATatgtccctgcctccctcccaccTTCCTCATCCTTTGTTCATTTTTCTCCTTTGAAACATGTTAAATCCTCTTGTAGTGTAAAATAGCCAGATTACAACTTGTTTGTGTTTCCTTTAAAAGAAATAAAGCATAACAGAGCACCCCATCATAAAAGCACTTTGGTATCTTAAAGACATCCACTTCATCCCATGTGCAGTCTCTAGCTGCTAGATAAATATTCATCATTTTTCTTTAGAGTGCTTCTAACATAATGCTGTGCTAAGACCATtgtgcatcctaaatgacaccctatttcctatatagttcactacttttgaccagagcctgggCCAAGTCCAAAGTTCCCTATATAGTTAATAGGGTGCCATGTAGGATAAAGTCCCTGTCACTCTTCCAGTAAAGTCCCTCGCAAGTCTCGTccaactgtacacacactcagCACTGTTAAATGAACATTTTGTTTGTGCaaaaaaaattatgaaaacacacacactcaaaaaagAATTATAAACAAATATAATACAAAACAAAGCAACAACTAAAAAATAATCTACATTCAGCTACAACAGTTTTGAAAAATAAAACGTGCAATAGTGCAATTTCAGTTTTCTGTCTGCAAACACTTTTCTTTCTATCTCCATATGTTGTCCCATATGTCATCATTTAGGGTTGCAACattctggtaactttccccaaattcccagaaTTCCCAGTTGGAGGATTACATATTTCTTGCTTATTCCCCCCTGATTCCAGAAAACttggaattttgggaaagttggTGGAATTTTGCAACCCGATCATCACTGCACAGGGACGCGTCTTGGTTGATCAGTGGCGGCTCCTCCGCATATTGCTTCTCCCCGAGTTCCCTCGGCTCTGGTCCCAACGCCTCACCTTCCTCCCCATACGGTCCTTCCACTTCTGTGCAATGGAGCCTTCGATGAGCAGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2058218 lncRNA upstream 91804 31191819 ~ 31192287 (+) True G1798551
TU2058217 lncRNA upstream 92947 31190791 ~ 31191144 (+) True G1798550
TU2058216 lncRNA upstream 93354 31190437 ~ 31190737 (+) True G1798549
TU2058153 lncRNA upstream 110317 31173142 ~ 31173774 (+) True G1798487
TU2058156 lncRNA upstream 241118 31042748 ~ 31042973 (+) True G1798490
TU2058271 lncRNA downstream 329 31289995 ~ 31291207 (+) True G1798600
TU2058276 lncRNA downstream 8701 31298367 ~ 31299233 (+) True G1798604
TU2058288 lncRNA downstream 23426 31313092 ~ 31315028 (+) True G1798615
TU2058337 lncRNA downstream 88553 31378219 ~ 31415967 (+) True G1798661
TU2059262 lncRNA downstream 213752 31503418 ~ 31552475 (+) True G1799506
XM_021579518.2 mRNA upstream 16962 31249607 ~ 31267129 (+) False dnajc10
XM_021579520.2 mRNA upstream 16962 31249622 ~ 31267129 (+) False dnajc10
XM_021579519.2 mRNA upstream 16962 31249639 ~ 31267129 (+) True dnajc10
XM_036959111.1 mRNA upstream 46728 31206388 ~ 31237363 (+) True LOC110502091
XM_036959110.1 mRNA upstream 96693 31090276 ~ 31187398 (+) False LOC110501750
XM_036959603.1 mRNA downstream 74876 31364542 ~ 31366811 (+) True LOC110501756
XM_036959121.1 mRNA downstream 168345 31458011 ~ 31535521 (+) False pde1a
XM_036959123.1 mRNA downstream 172786 31462452 ~ 31535521 (+) False pde1a
XM_036959122.1 mRNA downstream 201782 31491448 ~ 31535521 (+) True pde1a
XM_021579534.2 mRNA downstream 345844 31635510 ~ 31638598 (+) True neurod1
TU2058046 other upstream 393024 30888661 ~ 30891067 (+) False G1798397
TU2058047 other upstream 393024 30888661 ~ 30891067 (+) False G1798397
TU2058048 other upstream 393024 30888661 ~ 30891067 (+) False G1798397
TU2058049 other upstream 393024 30888661 ~ 30891067 (+) True G1798397
TU2057803 other upstream 738137 30500656 ~ 30545954 (+) True G1798168
TU2058268 other downstream 3886 31293552 ~ 31297419 (+) True G1798597
TU2059894 other downstream 1077970 32367636 ~ 32374181 (+) True LOC110501767
TU2060607 other downstream 1621127 32910793 ~ 32914182 (+) True G1800754
TU2064746 other downstream 4450773 35740439 ~ 35759426 (+) False LOC110501795
TU2064995 other downstream 4584896 35874562 ~ 35875452 (+) True G1804873

Expression Profile